PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Kaladp0075s0039.2.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
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Family | MYB_related | ||||||||
Protein Properties | Length: 189aa MW: 21442.8 Da PI: 7.3052 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 48.5 | 2e-15 | 2 | 43 | 5 | 48 |
-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 5 TteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 T E+ l +++++++G++ W++Iar+++ gRt++++k++w++++ Kaladp0075s0039.2.p 2 TSTEERLVIELHAKWGNR-WSRIARRLP-GRTDNEIKNFWRTHM 43 889***************.*********.************986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00717 | 2.7E-10 | 1 | 45 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 6.16E-11 | 1 | 43 | No hit | No description |
PROSITE profile | PS51294 | 24.293 | 1 | 47 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 1.01E-11 | 2 | 47 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 3.5E-19 | 2 | 44 | IPR009057 | Homeodomain-like |
Pfam | PF00249 | 1.1E-13 | 2 | 42 | IPR001005 | SANT/Myb domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 189 aa Download sequence Send to blast |
MTSTEERLVI ELHAKWGNRW SRIARRLPGR TDNEIKNFWR THMRKKAQER KRVNYLSTTS 60 SESESSPSSS NHTQGSRCDS GKESFYDTGG NATVTAMGKK QTDEEGERIK VDDIWKDIDT 120 SKDTITPLND GYNQGLCNYS CTPLVSPLWE FCPDSLWRMD EEDSKMLTPS NNYLLACCEA 180 GKSRLRGS* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor. {ECO:0000305}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By salicylic acid (SA). {ECO:0000269|PubMed:16463103}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_017982154.1 | 3e-61 | PREDICTED: transcription factor MYB48 isoform X2 | ||||
Swissprot | Q9LX82 | 2e-42 | MYB48_ARATH; Transcription factor MYB48 | ||||
TrEMBL | A0A061GXJ9 | 1e-58 | A0A061GXJ9_THECC; Myb domain protein 59 isoform 2 | ||||
TrEMBL | A0A061GY73 | 1e-58 | A0A061GY73_THECC; Myb domain protein 48 isoform 1 | ||||
STRING | EOY34142 | 2e-59 | (Theobroma cacao) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G46130.2 | 6e-45 | myb domain protein 48 |
Link Out ? help Back to Top | |
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Phytozome | Kaladp0075s0039.2.p |
Publications ? help Back to Top | |||
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