PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Kaladp0074s0031.1.p

Organism

Kalanchoe laxiflora

Taxonomic ID

1670617

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe

Family

Protein Properties

Length: 273aa MW: 30410.2 Da PI: 7.8192

Description

B3 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Kaladp0074s0031.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	99.8	1.7e-31	62	166	1	99
EEEE-..-HHHHTT-EE--HHH.HTT......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkl 84 f+k ltpsdv+k++rlv+pk++ae+h +g ++ l++ede gr W+++++y+++s++yvltkGW+++vk+++L++gD+v+F++ Kaladp0074s0031.1.p 62 FEKPLTPSDVGKLNRLVIPKQHAERHfplntsNGADSVGMLLSFEDEAGRFWRFRYSYWNSSQSYVLTKGWSRYVKEKRLDAGDVVLFER 151 99*************************99944445789*********************************************8 PP -SSSEE..EEEEE-S CS B3 85 dgrsefelvvkvfrk 99 + ++ +l+++++r+ Kaladp0074s0031.1.p 152 HPTDPDRLFIGWRRR 166 87788889**997 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:2.40.330.10	1.2E-38	55	174	IPR015300	DNA-binding pseudobarrel domain
CDD	cd10017	1.22E-28	61	155	No hit	No description
SuperFamily	SSF101936	4.45E-30	61	168	IPR015300	DNA-binding pseudobarrel domain
SMART	SM01019	8.4E-23	62	167	IPR003340	B3 DNA binding domain
Pfam	PF02362	1.3E-28	62	166	IPR003340	B3 DNA binding domain
PROSITE profile	PS50863	14.071	62	167	IPR003340	B3 DNA binding domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 273 aa Download sequence Send to blast
MADSTNSSPN SKSLVFAHHF QSFNLNNPND SEDDDGRRAE QIINSNCGGS QQQHHQQLVV 60 MFEKPLTPSD VGKLNRLVIP KQHAERHFPL NTSNGADSVG MLLSFEDEAG RFWRFRYSYW 120 NSSQSYVLTK GWSRYVKEKR LDAGDVVLFE RHPTDPDRLF IGWRRRHDPA HQSNSNAAAA 180 SVAGRGLSYS AHSPAYPAHQ YRPDSEASAG GAGVSQSKTE SFNGSSSTRT LRLFGVNMEY 240 QCESHQSEPA SPDGSSMSSP SRQVAYQRYY TQ*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5os9_A	5e-47	61	166	7	113	B3 domain-containing transcription factor NGA1
5os9_B	5e-47	61	166	7	113	B3 domain-containing transcription factor NGA1
Search in ModeBase

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_024928202.1	1e-72	B3 domain-containing protein At2g36080 isoform X1
Refseq	XP_024928203.1	1e-72	B3 domain-containing protein At2g36080 isoform X2
Swissprot	Q8GYJ2	1e-62	Y2608_ARATH; B3 domain-containing protein At2g36080
TrEMBL	A0A438EK28	1e-68	A0A438EK28_VITVI; B3 domain-containing protein
TrEMBL	F6HKN6	2e-69	F6HKN6_VITVI; Uncharacterized protein
STRING	VIT_08s0007g02810.t01	3e-70	(Vitis vinifera)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G06250.2	6e-59	B3 family protein

Link Out ? help Back to Top
Phytozome	Kaladp0074s0031.1.p

Publications ? help Back to Top
Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Tanaka M, et al. The Minimum Open Reading Frame, AUG-Stop, Induces Boron-Dependent Ribosome Stalling and mRNA Degradation. Plant Cell, 2016. 28(11): p. 2830-2849 [PMID:27760805]