PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Kaladp0073s0135.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
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Family | SBP | ||||||||
Protein Properties | Length: 187aa MW: 20723.4 Da PI: 9.0974 | ||||||||
Description | SBP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SBP | 130.1 | 8.1e-41 | 67 | 143 | 1 | 77 |
--SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S-- CS SBP 1 lCqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkq 77 +Cq+++C adl+ ak+yhrrhkvCe+h+ka+vvl++g++qrfCqqCsrfhe+sefDe+krsCrrrLa+hnerrrk++ Kaladp0073s0135.1.p 67 CCQADKCGADLAVAKQYHRRHKVCEAHAKAQVVLLAGIRQRFCQQCSRFHEVSEFDESKRSCRRRLAGHNERRRKHS 143 6**************************************************************************87 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:4.10.1100.10 | 1.8E-31 | 64 | 129 | IPR004333 | Transcription factor, SBP-box |
PROSITE profile | PS51141 | 31.419 | 65 | 142 | IPR004333 | Transcription factor, SBP-box |
SuperFamily | SSF103612 | 8.76E-37 | 67 | 145 | IPR004333 | Transcription factor, SBP-box |
Pfam | PF03110 | 1.2E-31 | 68 | 141 | IPR004333 | Transcription factor, SBP-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0010321 | Biological Process | regulation of vegetative phase change | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 187 aa Download sequence Send to blast |
MDCSRRGKHA MNKAVKSESS DASLTAVIAC EEDEDDDQKV RKLGSLQVLV EQGKSRASSC 60 KPGVARCCQA DKCGADLAVA KQYHRRHKVC EAHAKAQVVL LAGIRQRFCQ QCSRFHEVSE 120 FDESKRSCRR RLAGHNERRR KHSPAAAAVD PQGQESSSQK GIVVCGVIDD RGRFDYSLPE 180 KNFHIR* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ul4_A | 2e-35 | 57 | 141 | 1 | 84 | squamosa promoter binding protein-like 4 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Trans-acting factor that binds specifically to the consensus nucleotide sequence 5'-TNCGTACAA-3' of AP1 promoter. Promotes both vegetative phase change and flowering. {ECO:0000269|PubMed:10524240, ECO:0000269|PubMed:16914499}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00634 | PBM | Transfer from PK22320.1 | Download |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Negatively regulated by microRNAs miR156 and miR157. {ECO:0000305|PubMed:12202040, ECO:0000305|PubMed:16914499}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | - | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009626190.1 | 9e-52 | PREDICTED: squamosa promoter-binding-like protein 4 | ||||
Refseq | XP_016462352.1 | 9e-52 | PREDICTED: squamosa promoter-binding-like protein 4 | ||||
Swissprot | Q9S7A9 | 9e-40 | SPL4_ARATH; Squamosa promoter-binding-like protein 4 | ||||
TrEMBL | A0A0C5DID3 | 2e-50 | A0A0C5DID3_TOBAC; SBP-box 4 | ||||
STRING | XP_009626190.1 | 3e-51 | (Nicotiana tomentosiformis) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G53160.2 | 4e-42 | squamosa promoter binding protein-like 4 |
Link Out ? help Back to Top | |
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Phytozome | Kaladp0073s0135.1.p |