PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kaladp0070s0084.2.p
Organism
Kalanchoe laxiflora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family Dof
Protein Properties Length: 406aa    MW: 43427.7 Da    PI: 9.3165
Description Dof family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kaladp0070s0084.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-Dof1214.1e-3884144262
               zf-Dof   2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkkss 62 
                          +e  lkcprCdstntkfCy+nnysl+qPr+fCk+CrryWt+GGalrnvPvGgg+r+n k+s
  Kaladp0070s0084.2.p  84 PEPRLKCPRCDSTNTKFCYFNNYSLTQPRHFCKTCRRYWTRGGALRNVPVGGGCRRNSKRS 144
                          67789***************************************************98865 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
ProDomPD0074784.0E-3568142IPR003851Zinc finger, Dof-type
PfamPF027011.3E-3187142IPR003851Zinc finger, Dof-type
PROSITE profilePS5088429.36688142IPR003851Zinc finger, Dof-type
PROSITE patternPS01361090126IPR003851Zinc finger, Dof-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009640Biological Processphotomorphogenesis
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 406 aa     Download sequence    Send to blast
MVFSSVPLYL DPHNWHHHQQ QQQAQLHQQL SGGGHGGGDN PHPQNHQIGA QMPPPGASQA  60
VGASSSIRPG SMADRARQAK IPQPEPRLKC PRCDSTNTKF CYFNNYSLTQ PRHFCKTCRR  120
YWTRGGALRN VPVGGGCRRN SKRSGKPKAL GGERQAGAGP VNNNNSTSPI SSNSNNNDMN  180
NNSNLLDSIS HQNSFHHQPR LAQFPLLASL QGLAAHGQYT SPSSNIGLNF GGMMNSNAAQ  240
GELGFQIGAS SGASDQWRPH HFPNFLAGFD PPQLPHPPSS ASLFQFPIDH QSMDQAAAAN  300
PHTGPRTTSI SSAVNQQQPA CRPSSMPSNN DQQNNEAAAA VKAEEAAGQQ GGLNMNMNMN  360
LLSRSFLGMP DNSNGQYWIG SSNNNSNATS WTDLSGLNSS TTSLL*
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00407DAPTransfer from AT3G55370Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G55370.14e-45OBF-binding protein 3