PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kaladp0068s0290.1.p
Organism
Kalanchoe laxiflora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family MYB_related
Protein Properties Length: 297aa    MW: 33432.8 Da    PI: 5.4242
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kaladp0068s0290.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding43.19.7e-144585345
                         SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS
      Myb_DNA-binding  3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45
                         +++ eE+ + +++ +q+G++ W++I+ +++ gRt++++k++w 
  Kaladp0068s0290.1.p 45 KFSLEEERIVIELQEQFGNK-WARISTYLP-GRTDNDVKNFWS 85
                         799*****************.*********.***********5 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.605.6E-11137IPR009057Homeodomain-like
PROSITE profilePS512949.716136IPR017930Myb domain
SuperFamilySSF466899.77E-21284IPR009057Homeodomain-like
PfamPF139213.6E-5242No hitNo description
SMARTSM0071786238IPR001005SANT/Myb domain
CDDcd001679.97E-6436No hitNo description
PROSITE profilePS5129419.4013792IPR017930Myb domain
Gene3DG3DSA:1.10.10.601.7E-173890IPR009057Homeodomain-like
SMARTSM007174.8E-134290IPR001005SANT/Myb domain
PfamPF002494.3E-124585IPR001005SANT/Myb domain
CDDcd001676.71E-114584No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 297 aa     Download sequence    Send to blast
MNHVNKYGPR DWSSIRSKGL LCRTGKSCRL RWVNKLRPNL KNGCKFSLEE ERIVIELQEQ  60
FGNKWARIST YLPGRTDNDV KNFWSSRKKR LARMLQAKHT SPSSPLPAKQ SNSGDTLRYL  120
PLTWEIANEA SSSTQVDEQP SCVDQSREML LPPGPIDPCL IHYNPNLLPL EMMAPEKSMN  180
VDCPAADFPI QVPFAPTMPV LPVPLSPESQ ELVARLDNGC LTHGFEQEDG TGSVDPEMMF  240
SQELPQQNSD VGGENNLAAP DSFFDDFPAD MFDHIESLPS PSNWRPIPRD KMRHTE*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h8a_C4e-2119039126MYB TRANSFORMING PROTEIN
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002273472.11e-81PREDICTED: transcription factor MYB48
TrEMBLD7SLV63e-80D7SLV6_VITVI; Uncharacterized protein
STRINGVIT_15s0021g02040.t015e-81(Vitis vinifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G60460.16e-58MYB family protein