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Plant Transcription
Factor Database
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Transcription Factor Information
|
Basic
Information? help
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| TF ID |
Kaladp0067s0150.5.p |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
|
| Family |
MIKC_MADS |
| Protein Properties |
Length: 240aa MW: 27435.4 Da PI: 7.643 |
| Description |
MIKC_MADS family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Kaladp0067s0150.5.p | genome | JGI | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | SRF-TF | 87.1 | 9.7e-28 | 9 | 59 | 1 | 51 |
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
+ri+n++ rqvtfskRr+g+lKKA+ELS+LCd++v v+ifsstgkly+++s
Kaladp0067s0150.5.p 9 ERIDNTTSRQVTFSKRRKGLLKKAKELSILCDVQVGVMIFSSTGKLYDFAS 59
69***********************************************86 PP
|
| 2 | K-box | 81.8 | 1.5e-27 | 81 | 170 | 8 | 97 |
K-box 8 sleeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkk 97
++++++ + +++e+a L+ ++++Lq+ +R++ Ge+L+sL+++eLq+Le+qLe lk iR kK+e+++++ieel kke+ +q+en +Lr++
Kaladp0067s0150.5.p 81 ENSNSEVKFWKNEAATLQHQLQSLQEDHRKVFGEELSSLTIQELQHLENQLEMNLKCIRMKKDEIMVAEIEELHKKERLIQQENLDLRNQ 170
3788999********************************************************************************987 PP
|
| Protein Features
? help Back to Top |
 |
| Database |
Entry ID |
E-value |
Start |
End |
InterPro ID |
Description |
| SMART | SM00432 | 3.8E-38 | 1 | 60 | IPR002100 | Transcription factor, MADS-box |
| PROSITE profile | PS50066 | 30.151 | 1 | 61 | IPR002100 | Transcription factor, MADS-box |
| CDD | cd00265 | 3.55E-39 | 2 | 78 | No hit | No description |
| SuperFamily | SSF55455 | 5.76E-30 | 2 | 91 | IPR002100 | Transcription factor, MADS-box |
| PROSITE pattern | PS00350 | 0 | 3 | 57 | IPR002100 | Transcription factor, MADS-box |
| PRINTS | PR00404 | 2.1E-26 | 3 | 23 | IPR002100 | Transcription factor, MADS-box |
| Pfam | PF00319 | 1.2E-24 | 10 | 57 | IPR002100 | Transcription factor, MADS-box |
| PRINTS | PR00404 | 2.1E-26 | 23 | 38 | IPR002100 | Transcription factor, MADS-box |
| PRINTS | PR00404 | 2.1E-26 | 38 | 59 | IPR002100 | Transcription factor, MADS-box |
| Pfam | PF01486 | 2.8E-24 | 83 | 170 | IPR002487 | Transcription factor, K-box |
| PROSITE profile | PS51297 | 14.101 | 87 | 183 | IPR002487 | Transcription factor, K-box |
| Gene Ontology ? help Back to Top |
| GO Term |
GO Category |
GO Description |
| GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
| GO:0005634 | Cellular Component | nucleus |
| GO:0003677 | Molecular Function | DNA binding |
| GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
| GO:0046983 | Molecular Function | protein dimerization activity |
| Sequence ? help Back to Top |
| Protein Sequence Length: 240 aa
Download sequence Send
to blast |
MGRGKIVIER IDNTTSRQVT FSKRRKGLLK KAKELSILCD VQVGVMIFSS TGKLYDFASN 60
ASIKSTIEQY NKLKGNQLHL ENSNSEVKFW KNEAATLQHQ LQSLQEDHRK VFGEELSSLT 120
IQELQHLENQ LEMNLKCIRM KKDEIMVAEI EELHKKERLI QQENLDLRNQ AVCYIKNTEV 180
HSAQAPSRVK AAPLHTRELC WEDDTLEHVQ LQLSQPQPQP QPQGSELSPG NIMMGLHLN*
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| Functional Description ? help
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| Source |
Description |
| UniProt | Probable transcription factor involved in the regulation of flowering time in long-day photoperiod. Participates in the repression of FT expression and floral transition, by interacting closely with the FLC-SVP pathways (PubMed:24876250). Functions in the satellite meristemoid lineage of stomatal development (PubMed:17704216). {ECO:0000269|PubMed:17704216, ECO:0000269|PubMed:24876250}. |
| Regulation -- Description ? help
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| Source |
Description |
| UniProt | INDUCTION: Repressed by the micro RNA miR824. {ECO:0000269|PubMed:18579782}. |
