PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kaladp0067s0128.1.p
Organism
Kalanchoe laxiflora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family NAC
Protein Properties Length: 364aa    MW: 41595.6 Da    PI: 6.3791
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kaladp0067s0128.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM177.15e-55101382129
                  NAM   2 ppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk...kvkaeekewyfFskrdkkyatgkrknratksgyWkatgk 88 
                          ppGfrFhPtdeelv +yLkkkv+++k++l +vi+++d+y++ePwdL++     ++e++ewyfFs++dkky+tg+r+nrat +g+Wkatg+
  Kaladp0067s0128.1.p  10 PPGFRFHPTDEELVGYYLKKKVASQKIDL-DVIRDIDLYRIEPWDLQEkcwIGYEEQNEWYFFSHKDKKYPTGTRTNRATMAGFWKATGR 98 
                          9****************************.9***************953543344677******************************** PP

                  NAM  89 dkevlskkgelvglkktLvfykgrapkgektdWvmheyrle 129
                          dk+v++ k++l+g++ktLvfykgrap+g+k+dW+mheyrle
  Kaladp0067s0128.1.p  99 DKAVYD-KRKLIGMRKTLVFYKGRAPNGQKSDWIMHEYRLE 138
                          ******.999*****************************85 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019419.42E-607158IPR003441NAC domain
PROSITE profilePS5100558.8829158IPR003441NAC domain
PfamPF023651.3E-2810137IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010200Biological Processresponse to chitin
GO:0048759Biological Processxylem vessel member cell differentiation
GO:1901348Biological Processpositive regulation of secondary cell wall biogenesis
GO:1990110Biological Processcallus formation
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 364 aa     Download sequence    Send to blast
MDQPIESCIP PGFRFHPTDE ELVGYYLKKK VASQKIDLDV IRDIDLYRIE PWDLQEKCWI  60
GYEEQNEWYF FSHKDKKYPT GTRTNRATMA GFWKATGRDK AVYDKRKLIG MRKTLVFYKG  120
RAPNGQKSDW IMHEYRLETD ENGPPQEEGW VVCRAFKKRT TTSQTKSITK PAWDSSAFFY  180
DDSGGSSSAI DSPLDYITRH HQQQPLQSTS FMSQNVFCKK EMELSGHNAN IRNSSLMISC  240
QDHQFVQLPQ LESPSLPLLK KPNSSSSLIS DHTETNKKEE AYHISSSKVA DWRALDKFVA  300
SQLSHGDNYD IDHGGNQIIP AGFGTLHDDE EAFLTVMQMN GDKLIVDGGR NDRLNNEVLV  360
GFE*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A2e-4921608170Stress-induced transcription factor NAC1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator that binds to the secondary wall NAC binding element (SNBE), 5'-(T/A)NN(C/T)(T/C/G)TNNNNNNNA(A/C)GN(A/C/T)(A/T)-3', in the promoter of target genes (By similarity). Involved in xylem formation by promoting the expression of secondary wall-associated transcription factors and of genes involved in secondary wall biosynthesis and programmed cell death, genes driven by the secondary wall NAC binding element (SNBE). Triggers thickening of secondary walls (PubMed:25148240). {ECO:0000250|UniProtKB:Q9LVA1, ECO:0000269|PubMed:25148240}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00266DAPTransfer from AT2G18060Download
Motif logo
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by chitin (e.g. chitooctaose) (PubMed:17722694). Accumulates in plants exposed to callus induction medium (CIM) (PubMed:17581762). {ECO:0000269|PubMed:17581762, ECO:0000269|PubMed:17722694}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027074108.11e-155NAC domain-containing protein 37-like
RefseqXP_027077885.11e-155NAC domain-containing protein 37-like
RefseqXP_027179512.11e-155NAC domain-containing protein 37-like
SwissprotQ9SL411e-135NAC37_ARATH; NAC domain-containing protein 37
TrEMBLA0A2K1ZMJ01e-150A0A2K1ZMJ0_POPTR; NAC family protein
TrEMBLE5KUH91e-150E5KUH9_POPTR; Transcription factor
STRINGEOX908921e-149(Theobroma cacao)
STRINGXP_009611974.11e-149(Nicotiana tomentosiformis)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G18060.11e-120vascular related NAC-domain protein 1
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Negi S,Tak H,Ganapathi TR
    Cloning and functional characterization of MusaVND1 using transgenic banana plants.
    Transgenic Res., 2015. 24(3): p. 571-85
    [PMID:25523085]
  3. Tan TT, et al.
    Transcription Factors VND1-VND3 Contribute to Cotyledon Xylem Vessel Formation.
    Plant Physiol., 2018. 176(1): p. 773-789
    [PMID:29133368]