PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Kaladp0064s0170.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
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Family | bHLH | ||||||||
Protein Properties | Length: 221aa MW: 24084.4 Da PI: 11.0443 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 43.7 | 4.9e-14 | 33 | 80 | 3 | 55 |
HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 r+h e+E+rRRdriN + +Lr+l+Pk+ K++Ka+ L ++++++k Lq Kaladp0064s0170.1.p 33 RSHTEAEKRRRDRINGHLLTLRKLVPKS-----DKMDKAALLARVIQHVKGLQ 80 78*************************8.....7*****************99 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF47459 | 7.72E-14 | 22 | 84 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
PROSITE profile | PS50888 | 15.326 | 30 | 79 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 1.2E-11 | 33 | 80 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 3.7E-14 | 33 | 82 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 1.03E-10 | 35 | 80 | No hit | No description |
SMART | SM00353 | 3.6E-13 | 36 | 85 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
PROSITE profile | PS51671 | 8.734 | 121 | 198 | IPR002912 | ACT domain |
CDD | cd04873 | 3.95E-4 | 123 | 168 | No hit | No description |
Gene3D | G3DSA:3.30.70.260 | 9.2E-5 | 123 | 169 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0008152 | Biological Process | metabolic process | ||||
GO:0016597 | Molecular Function | amino acid binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 221 aa Download sequence Send to blast |
MLSRRDTVAR RTTRRWPASS KNGRAAAAAS SSRSHTEAEK RRRDRINGHL LTLRKLVPKS 60 DKMDKAALLA RVIQHVKGLQ GEAAEVGKAL TVPTDVDEVR ISTYAAAAES TSGSQTDIFM 120 EASLCCEDRP ELFAEIDQAL QSLNLSTARV EMGSLGGRVR IILLLSGNGI RNDSCSSQNR 180 MINLKGSLNV ALNRIVNSTP SVSSYRVTSK RQRFFLPSDT * |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_002272668.2 | 7e-62 | PREDICTED: transcription factor bHLH51 | ||||
TrEMBL | A0A2R6PLL6 | 1e-59 | A0A2R6PLL6_ACTCH; Transcription factor like | ||||
TrEMBL | A0A438J2F1 | 5e-60 | A0A438J2F1_VITVI; Transcription factor bHLH51 | ||||
STRING | VIT_13s0067g01350.t01 | 3e-60 | (Vitis vinifera) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G40200.1 | 5e-42 | bHLH family protein |
Link Out ? help Back to Top | |
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Phytozome | Kaladp0064s0170.1.p |