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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Kaladp0064s0083.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
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Family | GRAS | ||||||||
Protein Properties | Length: 453aa MW: 51073.5 Da PI: 6.451 | ||||||||
Description | GRAS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GRAS | 465 | 4.4e-142 | 48 | 449 | 1 | 374 |
GRAS 1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPi 90 l++lLl+cA++v++g+le a+ +L ++s++aspdgd+mqR+a+yfteALa+r+++s+++ly+al++++ + ++ ee+ a+klf ev+P+ Kaladp0064s0083.1.p 48 LIHLLLTCATHVATGSLESANIALDQISQIASPDGDTMQRIASYFTEALASRILKSWPGLYRALNSTRMP--TVHEEILARKLFLEVFPF 135 689*************************************************************999998..6***************** PP GRAS 91 lkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnv 180 lk+ +l++NqaI ea+ege+++HiiD+ +++QW+aLlq L++Rpegpp+lRiTg+++ +ke l ++++rL+ Ae+l++pf+fn+ Kaladp0064s0083.1.p 136 LKIMYLVTNQAIIEAMEGEKMIHIIDLCSAEPAQWVALLQMLSARPEGPPHLRITGIHQ----QKEVLDQMAQRLNVEAERLDIPFQFNP 221 ***********************************************************....9************************** PP GRAS 181 lvakrledleleeLrvkpgEalaVnlvlqlhrll...................................desvsleserdevLklvksls 235 v+++le l++++Lrvk+gEala++++lqlh+ll ++++s + + d++L ++sls Kaladp0064s0083.1.p 222 -VVSALERLDFDSLRVKTGEALAISSILQLHKLLasdddrfnnpekprnqhqatfgeliekdtspdstsSSPLSFSTKMDSFLMDLRSLS 310 .799*************************************************************9999888999999************ PP GRAS 236 PkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFk 325 Pkvvvv+eq+++hns++++er++eal+yy+alfd+le+ ++r+s er vE++llg+ei+n++aceg+er+erhe+l+kW +rl++aGF+ Kaladp0064s0083.1.p 311 PKVVVVAEQDSNHNSPTLMERLTEALYYYAALFDCLESRVSRTSPERLRVEKVLLGEEIKNIIACEGRERKERHEKLHKWAQRLNAAGFG 400 ****************************************************************************************** PP GRAS 326 pvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374 + pls++a+ qa++ll+ ++ dgy++ +e+gs+vl+W+dr+L+ vSaWr Kaladp0064s0083.1.p 401 ASPLSYHAMLQARRLLQGYGCDGYQLRDENGSIVLCWQDRALFCVSAWR 449 ************************************************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50985 | 60.952 | 22 | 429 | IPR005202 | Transcription factor GRAS |
Pfam | PF03514 | 1.5E-139 | 48 | 449 | IPR005202 | Transcription factor GRAS |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009739 | Biological Process | response to gibberellin | ||||
GO:0005634 | Cellular Component | nucleus |
Sequence ? help Back to Top |
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Protein Sequence Length: 453 aa Download sequence Send to blast |
MAPTFQEDGS SSVTSSPLHF FSMMSLSPGS SAYPWIRELK SEERGLYLIH LLLTCATHVA 60 TGSLESANIA LDQISQIASP DGDTMQRIAS YFTEALASRI LKSWPGLYRA LNSTRMPTVH 120 EEILARKLFL EVFPFLKIMY LVTNQAIIEA MEGEKMIHII DLCSAEPAQW VALLQMLSAR 180 PEGPPHLRIT GIHQQKEVLD QMAQRLNVEA ERLDIPFQFN PVVSALERLD FDSLRVKTGE 240 ALAISSILQL HKLLASDDDR FNNPEKPRNQ HQATFGELIE KDTSPDSTSS SPLSFSTKMD 300 SFLMDLRSLS PKVVVVAEQD SNHNSPTLME RLTEALYYYA ALFDCLESRV SRTSPERLRV 360 EKVLLGEEIK NIIACEGRER KERHEKLHKW AQRLNAAGFG ASPLSYHAML QARRLLQGYG 420 CDGYQLRDEN GSIVLCWQDR ALFCVSAWRC RR* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5b3h_A | 5e-74 | 36 | 451 | 6 | 380 | Protein SCARECROW |
5b3h_D | 5e-74 | 36 | 451 | 6 | 380 | Protein SCARECROW |
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Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor involved in plant development. {ECO:0000250}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_023924242.1 | 0.0 | scarecrow-like protein 3 | ||||
Swissprot | Q9LPR8 | 0.0 | SCL3_ARATH; Scarecrow-like protein 3 | ||||
TrEMBL | A0A2N9J6M9 | 0.0 | A0A2N9J6M9_FAGSY; Uncharacterized protein | ||||
STRING | EOY32806 | 0.0 | (Theobroma cacao) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G50420.1 | 0.0 | scarecrow-like 3 |
Link Out ? help Back to Top | |
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Phytozome | Kaladp0064s0083.1.p |
Publications ? help Back to Top | |||
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