PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kaladp0064s0083.1.p
Organism
Kalanchoe laxiflora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family GRAS
Protein Properties Length: 453aa    MW: 51073.5 Da    PI: 6.451
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kaladp0064s0083.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS4654.4e-142484491374
                 GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPi 90 
                          l++lLl+cA++v++g+le a+ +L ++s++aspdgd+mqR+a+yfteALa+r+++s+++ly+al++++ +  ++ ee+ a+klf ev+P+
  Kaladp0064s0083.1.p  48 LIHLLLTCATHVATGSLESANIALDQISQIASPDGDTMQRIASYFTEALASRILKSWPGLYRALNSTRMP--TVHEEILARKLFLEVFPF 135
                          689*************************************************************999998..6***************** PP

                 GRAS  91 lkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnv 180
                          lk+ +l++NqaI ea+ege+++HiiD+   +++QW+aLlq L++Rpegpp+lRiTg+++    +ke l ++++rL+  Ae+l++pf+fn+
  Kaladp0064s0083.1.p 136 LKIMYLVTNQAIIEAMEGEKMIHIIDLCSAEPAQWVALLQMLSARPEGPPHLRITGIHQ----QKEVLDQMAQRLNVEAERLDIPFQFNP 221
                          ***********************************************************....9************************** PP

                 GRAS 181 lvakrledleleeLrvkpgEalaVnlvlqlhrll...................................desvsleserdevLklvksls 235
                           v+++le l++++Lrvk+gEala++++lqlh+ll                                   ++++s + + d++L  ++sls
  Kaladp0064s0083.1.p 222 -VVSALERLDFDSLRVKTGEALAISSILQLHKLLasdddrfnnpekprnqhqatfgeliekdtspdstsSSPLSFSTKMDSFLMDLRSLS 310
                          .799*************************************************************9999888999999************ PP

                 GRAS 236 PkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFk 325
                          Pkvvvv+eq+++hns++++er++eal+yy+alfd+le+ ++r+s er  vE++llg+ei+n++aceg+er+erhe+l+kW +rl++aGF+
  Kaladp0064s0083.1.p 311 PKVVVVAEQDSNHNSPTLMERLTEALYYYAALFDCLESRVSRTSPERLRVEKVLLGEEIKNIIACEGRERKERHEKLHKWAQRLNAAGFG 400
                          ****************************************************************************************** PP

                 GRAS 326 pvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374
                          + pls++a+ qa++ll+ ++ dgy++ +e+gs+vl+W+dr+L+ vSaWr
  Kaladp0064s0083.1.p 401 ASPLSYHAMLQARRLLQGYGCDGYQLRDENGSIVLCWQDRALFCVSAWR 449
                          ************************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098560.95222429IPR005202Transcription factor GRAS
PfamPF035141.5E-13948449IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009739Biological Processresponse to gibberellin
GO:0005634Cellular Componentnucleus
Sequence ? help Back to Top
Protein Sequence    Length: 453 aa     Download sequence    Send to blast
MAPTFQEDGS SSVTSSPLHF FSMMSLSPGS SAYPWIRELK SEERGLYLIH LLLTCATHVA  60
TGSLESANIA LDQISQIASP DGDTMQRIAS YFTEALASRI LKSWPGLYRA LNSTRMPTVH  120
EEILARKLFL EVFPFLKIMY LVTNQAIIEA MEGEKMIHII DLCSAEPAQW VALLQMLSAR  180
PEGPPHLRIT GIHQQKEVLD QMAQRLNVEA ERLDIPFQFN PVVSALERLD FDSLRVKTGE  240
ALAISSILQL HKLLASDDDR FNNPEKPRNQ HQATFGELIE KDTSPDSTSS SPLSFSTKMD  300
SFLMDLRSLS PKVVVVAEQD SNHNSPTLME RLTEALYYYA ALFDCLESRV SRTSPERLRV  360
EKVLLGEEIK NIIACEGRER KERHEKLHKW AQRLNAAGFG ASPLSYHAML QARRLLQGYG  420
CDGYQLRDEN GSIVLCWQDR ALFCVSAWRC RR*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_A5e-74364516380Protein SCARECROW
5b3h_D5e-74364516380Protein SCARECROW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in plant development. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023924242.10.0scarecrow-like protein 3
SwissprotQ9LPR80.0SCL3_ARATH; Scarecrow-like protein 3
TrEMBLA0A2N9J6M90.0A0A2N9J6M9_FAGSY; Uncharacterized protein
STRINGEOY328060.0(Theobroma cacao)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G50420.10.0scarecrow-like 3
Publications ? help Back to Top
  1. Gong X, et al.
    SEUSS Integrates Gibberellin Signaling with Transcriptional Inputs from the SHR-SCR-SCL3 Module to Regulate Middle Cortex Formation in the Arabidopsis Root.
    Plant Physiol., 2016. 170(3): p. 1675-83
    [PMID:26818732]
  2. Lee SA, et al.
    Interplay between ABA and GA Modulates the Timing of Asymmetric Cell Divisions in the Arabidopsis Root Ground Tissue.
    Mol Plant, 2016. 9(6): p. 870-84
    [PMID:26970019]
  3. Choi JW,Lim J
    Control of Asymmetric Cell Divisions during Root Ground Tissue Maturation.
    Mol. Cells, 2016. 39(7): p. 524-9
    [PMID:27306644]