PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Protein Features |

Gene Ontology |

Regulation |

Basic Information? help Back to Top

TF ID

Kaladp0064s0082.4.p

Organism

Kalanchoe laxiflora

Taxonomic ID

1670617

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe

Family

HB-other

Protein Properties

Length: 388aa MW: 43109.9 Da PI: 8.2985

Description

HB-other family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Kaladp0064s0082.4.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	62.4	6.7e-20	24	79	2	57
T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHHC CS Homeobox 2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakekk 57 rkR t+ qle+Lee++e ++yp+++++ +A+k+gLte+qV+ WF+ rR k+k+ Kaladp0064s0082.4.p 24 RKRKLKTPAQLEALEEYYEDHKYPTESMKSAIAEKIGLTEKQVSGWFCHRRLKDKR 79 89****************************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	7.4E-21	9	79	IPR009057	Homeodomain-like
SuperFamily	SSF46689	1.41E-17	19	84	IPR009057	Homeodomain-like
PROSITE profile	PS50071	16.601	20	80	IPR001356	Homeobox domain
SMART	SM00389	5.5E-20	22	84	IPR001356	Homeobox domain
CDD	cd00086	6.57E-18	24	79	No hit	No description
Pfam	PF00046	2.8E-17	24	79	IPR001356	Homeobox domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 388 aa Download sequence Send to blast
MEDCNVDSLD GHTEEDKTPV ETNRKRKLKT PAQLEALEEY YEDHKYPTES MKSAIAEKIG 60 LTEKQVSGWF CHRRLKDKRI SKDEALGNGR MDRSSGVIQE HCSGPGQDSC GSTKPGEYKP 120 ADLREVESQW LAGQELSPKN LSHHNRLNTA SLEVDMDDTS SESSLPLRPS HMPQRDAPQM 180 WENSRYLIQN GDAMPSNPKV TIGAQLRRPS GYLKIKPKAE HPAIAAVKRQ LGNSFREDGP 240 PIGIEFHPLP IDAFQEAPKG TTTGPANGIG FLLPNISGSS YHVARSRLEC IVVFSNLTAL 300 ICRKKAQLLI MGLRYQTHII DPGHSNPLSL ITSSLIVDGD HRQTQTKNTH RKLIVVSGTF 360 LMEQSMAQRG CTFNLLPVIT SAFMRRH*

Sequence ? help Back to Top

Protein Sequence Length: 388 aa Download sequence Send to blast

MEDCNVDSLD GHTEEDKTPV ETNRKRKLKT PAQLEALEEY YEDHKYPTES MKSAIAEKIG  60
LTEKQVSGWF CHRRLKDKRI SKDEALGNGR MDRSSGVIQE HCSGPGQDSC GSTKPGEYKP  120
ADLREVESQW LAGQELSPKN LSHHNRLNTA SLEVDMDDTS SESSLPLRPS HMPQRDAPQM  180
WENSRYLIQN GDAMPSNPKV TIGAQLRRPS GYLKIKPKAE HPAIAAVKRQ LGNSFREDGP  240
PIGIEFHPLP IDAFQEAPKG TTTGPANGIG FLLPNISGSS YHVARSRLEC IVVFSNLTAL  300
ICRKKAQLLI MGLRYQTHII DPGHSNPLSL ITSSLIVDGD HRQTQTKNTH RKLIVVSGTF  360
LMEQSMAQRG CTFNLLPVIT SAFMRRH*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_024199697.1	4e-82	uncharacterized protein LOC112202888
TrEMBL	A0A2P6QF75	9e-81	A0A2P6QF75_ROSCH; Putative transcription factor Homobox-WOX family
STRING	EMJ15077	1e-80	(Prunus persica)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G03250.1	3e-59	HB-other family protein

Link Out ? help Back to Top
Phytozome	Kaladp0064s0082.4.p