PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Kaladp0064s0082.4.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
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Family | HB-other | ||||||||
Protein Properties | Length: 388aa MW: 43109.9 Da PI: 8.2985 | ||||||||
Description | HB-other family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 62.4 | 6.7e-20 | 24 | 79 | 2 | 57 |
T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHHC CS Homeobox 2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakekk 57 rkR t+ qle+Lee++e ++yp+++++ +A+k+gLte+qV+ WF+ rR k+k+ Kaladp0064s0082.4.p 24 RKRKLKTPAQLEALEEYYEDHKYPTESMKSAIAEKIGLTEKQVSGWFCHRRLKDKR 79 89****************************************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 7.4E-21 | 9 | 79 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 1.41E-17 | 19 | 84 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50071 | 16.601 | 20 | 80 | IPR001356 | Homeobox domain |
SMART | SM00389 | 5.5E-20 | 22 | 84 | IPR001356 | Homeobox domain |
CDD | cd00086 | 6.57E-18 | 24 | 79 | No hit | No description |
Pfam | PF00046 | 2.8E-17 | 24 | 79 | IPR001356 | Homeobox domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 388 aa Download sequence Send to blast |
MEDCNVDSLD GHTEEDKTPV ETNRKRKLKT PAQLEALEEY YEDHKYPTES MKSAIAEKIG 60 LTEKQVSGWF CHRRLKDKRI SKDEALGNGR MDRSSGVIQE HCSGPGQDSC GSTKPGEYKP 120 ADLREVESQW LAGQELSPKN LSHHNRLNTA SLEVDMDDTS SESSLPLRPS HMPQRDAPQM 180 WENSRYLIQN GDAMPSNPKV TIGAQLRRPS GYLKIKPKAE HPAIAAVKRQ LGNSFREDGP 240 PIGIEFHPLP IDAFQEAPKG TTTGPANGIG FLLPNISGSS YHVARSRLEC IVVFSNLTAL 300 ICRKKAQLLI MGLRYQTHII DPGHSNPLSL ITSSLIVDGD HRQTQTKNTH RKLIVVSGTF 360 LMEQSMAQRG CTFNLLPVIT SAFMRRH* |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_024199697.1 | 4e-82 | uncharacterized protein LOC112202888 | ||||
TrEMBL | A0A2P6QF75 | 9e-81 | A0A2P6QF75_ROSCH; Putative transcription factor Homobox-WOX family | ||||
STRING | EMJ15077 | 1e-80 | (Prunus persica) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G03250.1 | 3e-59 | HB-other family protein |
Link Out ? help Back to Top | |
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Phytozome | Kaladp0064s0082.4.p |