PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kaladp0063s0022.1.p
Organism
Kalanchoe laxiflora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family MYB
Protein Properties Length: 278aa    MW: 30537 Da    PI: 7.3011
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kaladp0063s0022.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding29.61.6e-09756346
                         SS-HHHHHHHHHHHHHTTTT.......-HHHHHHHHTTTS-HHHHHHHHHH CS
      Myb_DNA-binding  3 rWTteEdellvdavkqlGgg.......tWktIartmgkgRtlkqcksrwqk 46
                         +W+ +Ed  + da++ +  +       +W++Ia+ ++ +++  q+k++++ 
  Kaladp0063s0022.1.p  7 SWSRDEDRAFEDAIATHWVEnledsdeHWEKIAAALP-TKSIHQLKHHYRL 56
                         7*****************99*****************.***********96 PP
2Myb_DNA-binding40.75.6e-13126170347
                          SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
      Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                          +WT+eE+ l++ +  ++G+g+W++I+r +  +Rt+ q+ s+ qky
  Kaladp0063s0022.1.p 126 PWTEEEHRLFLLGLDKFGKGDWRSISRNFVITRTPTQVASHAQKY 170
                          7*****************************99************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS512938.499362IPR017884SANT domain
SMARTSM007173.4E-7460IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.604.8E-5657IPR009057Homeodomain-like
PfamPF002495.0E-7756IPR001005SANT/Myb domain
SuperFamilySSF466891.0E-7764IPR009057Homeodomain-like
CDDcd001671.37E-51158No hitNo description
PROSITE profilePS5129418.403119175IPR017930Myb domain
SuperFamilySSF466894.38E-17121176IPR009057Homeodomain-like
TIGRFAMsTIGR015574.7E-17123173IPR006447Myb domain, plants
SMARTSM007171.3E-10123173IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.604.9E-11124169IPR009057Homeodomain-like
PfamPF002491.5E-11126170IPR001005SANT/Myb domain
CDDcd001673.65E-10126171No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009651Biological Processresponse to salt stress
GO:0009733Biological Processresponse to auxin
GO:0009739Biological Processresponse to gibberellin
GO:0009751Biological Processresponse to salicylic acid
GO:0009753Biological Processresponse to jasmonic acid
GO:0046686Biological Processresponse to cadmium ion
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 278 aa     Download sequence    Send to blast
MTSSSSSWSR DEDRAFEDAI ATHWVENLED SDEHWEKIAA ALPTKSIHQL KHHYRLLVED  60
VNDIDAGIIP LPEYVGDDAS PSSSSKKSPY IADSNNNNNN SKKGFPGHES KANSNRSEQE  120
RRKGIPWTEE EHRLFLLGLD KFGKGDWRSI SRNFVITRTP TQVASHAQKY FIRLSSMNRD  180
RRRSSIHDIT SVNNGDITTP ITGQPASTNP NGGVPAGPTK HRPPEMGMYG APVGQVVGAP  240
VGHVAAVGTP VMMPPGHHPP YVVPVPYPVA PQPMHQH*
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator that coordinates abscisic acid (ABA) biosynthesis and signaling-related genes via binding to the specific promoter motif 5'-(A/T)AACCAT-3'. Represses ABA-mediated salt (e.g. NaCl and KCl) stress tolerance. Regulates leaf shape and promotes vegetative growth. {ECO:0000269|PubMed:26243618}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00191DAPTransfer from AT1G49010Download
Motif logo
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by salicylic acid (SA) and gibberellic acid (GA) (PubMed:16463103). Triggered by dehydration and salt stress (PubMed:26243618). {ECO:0000269|PubMed:16463103, ECO:0000269|PubMed:26243618}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021983810.11e-118transcription factor MYBS1
SwissprotQ9FNN62e-82SRM1_ARATH; Transcription factor SRM1
TrEMBLA0A251TYS31e-117A0A251TYS3_HELAN; Putative duplicated homeodomain-like superfamily protein
STRINGVIT_17s0000g04130.t011e-111(Vitis vinifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G08520.17e-63MYB family protein
Publications ? help Back to Top
  1. Wang T, et al.
    Salt-Related MYB1 Coordinates Abscisic Acid Biosynthesis and Signaling during Salt Stress in Arabidopsis.
    Plant Physiol., 2015. 169(2): p. 1027-41
    [PMID:26243618]
  2. Chen YS, et al.
    Two MYB-related transcription factors play opposite roles in sugar signaling in Arabidopsis.
    Plant Mol. Biol., 2017. 93(3): p. 299-311
    [PMID:27866313]