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Plant Transcription
Factor Database
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Transcription Factor Information
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Basic
Information? help
Back to Top |
| TF ID |
Kaladp0062s0180.6.p |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
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| Family |
MIKC_MADS |
| Protein Properties |
Length: 217aa MW: 24400.7 Da PI: 5.7896 |
| Description |
MIKC_MADS family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Kaladp0062s0180.6.p | genome | JGI | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | SRF-TF | 87.1 | 9.6e-28 | 9 | 59 | 1 | 51 |
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
k+i+n++ rqvtfskRr g++KKA+EL +LCdae+a+i+fs tgkl+eys+
Kaladp0062s0180.6.p 9 KKIDNTTARQVTFSKRRRGLFKKAHELATLCDAEIALIVFSATGKLFEYSN 59
68***********************************************95 PP
|
| 2 | K-box | 43.9 | 1e-15 | 77 | 171 | 5 | 99 |
K-box 5 sgksleeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaL 94
+ ++ + + + + +a L ke+++ +e R+l+Ge L+ Lsl+eL+qLe+ Le +l ++ ++K e ++i+ l++k el een++L
Kaladp0062s0180.6.p 77 QAADQPSLELQLESSTYAMLSKELSERTNEVRRLKGEHLQGLSLEELKQLEKSLEVGLLRVVETKGEKAEREINALRQKGAELMEENERL 166
4455666677888889999*******9*************************************************************** PP
K-box 95 rkkle 99
r++le
Kaladp0062s0180.6.p 167 RMQLE 171
**987 PP
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| Protein Features
? help Back to Top |
 |
| Database |
Entry ID |
E-value |
Start |
End |
InterPro ID |
Description |
| SMART | SM00432 | 4.2E-39 | 1 | 60 | IPR002100 | Transcription factor, MADS-box |
| PROSITE profile | PS50066 | 29.506 | 1 | 61 | IPR002100 | Transcription factor, MADS-box |
| SuperFamily | SSF55455 | 1.28E-30 | 3 | 85 | IPR002100 | Transcription factor, MADS-box |
| PROSITE pattern | PS00350 | 0 | 3 | 57 | IPR002100 | Transcription factor, MADS-box |
| CDD | cd00265 | 1.21E-40 | 3 | 75 | No hit | No description |
| PRINTS | PR00404 | 3.9E-27 | 3 | 23 | IPR002100 | Transcription factor, MADS-box |
| Pfam | PF00319 | 2.5E-25 | 10 | 57 | IPR002100 | Transcription factor, MADS-box |
| PRINTS | PR00404 | 3.9E-27 | 23 | 38 | IPR002100 | Transcription factor, MADS-box |
| PRINTS | PR00404 | 3.9E-27 | 38 | 59 | IPR002100 | Transcription factor, MADS-box |
| PROSITE profile | PS51297 | 11.528 | 86 | 176 | IPR002487 | Transcription factor, K-box |
| Pfam | PF01486 | 2.7E-13 | 90 | 170 | IPR002487 | Transcription factor, K-box |
| Gene Ontology ? help Back to Top |
| GO Term |
GO Category |
GO Description |
| GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
| GO:0005634 | Cellular Component | nucleus |
| GO:0003677 | Molecular Function | DNA binding |
| GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
| GO:0046983 | Molecular Function | protein dimerization activity |
| Sequence ? help Back to Top |
| Protein Sequence Length: 217 aa
Download sequence Send
to blast |
MVRQKIQIKK IDNTTARQVT FSKRRRGLFK KAHELATLCD AEIALIVFSA TGKLFEYSNS 60
SMRQVIERHS LHNENKQAAD QPSLELQLES STYAMLSKEL SERTNEVRRL KGEHLQGLSL 120
EELKQLEKSL EVGLLRVVET KGEKAEREIN ALRQKGAELM EENERLRMQL ESMPEVETVA 180
ASSVPEQGQS SESMAADPPP YDDSSDTSLK LGLPYP*
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| Functional Description ? help
Back to Top |
| Source |
Description |
| UniProt | Putative transcription factor that coordinates gene expression underlying the differentiation of the pedicel abscission zone. May also be involved in the maintenance of the inflorescence meristem state. |
