PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Kaladp0062s0146.2.p

Organism

Kalanchoe laxiflora

Taxonomic ID

1670617

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe

Family

MYB_related

Protein Properties

Length: 317aa MW: 34707.6 Da PI: 9.9371

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Kaladp0062s0146.2.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	36.1	1.5e-11	5	55	1	46
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT.....TTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmg.....kgRtlkqcksrwqk 46 +++WT+eE+ l+ +v ++G g W+tI + R+ ++k++w++ Kaladp0062s0146.2.p 5 KQKWTAEEESALKAGVVKHGAGKWRTILKDPEfssvlYLRSNVDLKDKWRN 55 79*********************************88*********9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	10.528	1	58	IPR017930	Myb domain
SuperFamily	SSF46689	1.94E-15	2	70	IPR009057	Homeodomain-like
SMART	SM00717	1.5E-6	4	59	IPR001005	SANT/Myb domain
Pfam	PF00249	6.6E-8	5	55	IPR001005	SANT/Myb domain
Gene3D	G3DSA:1.10.10.60	5.4E-13	5	56	IPR009057	Homeodomain-like
CDD	cd11660	1.41E-18	6	56	No hit	No description
SMART	SM00526	1.5E-14	120	185	IPR005818	Linker histone H1/H5, domain H15
SuperFamily	SSF46785	5.33E-18	120	201	IPR011991	Winged helix-turn-helix DNA-binding domain
Gene3D	G3DSA:1.10.10.10	3.7E-16	121	201	IPR011991	Winged helix-turn-helix DNA-binding domain
PROSITE profile	PS51504	23.91	122	190	IPR005818	Linker histone H1/H5, domain H15
Pfam	PF00538	1.7E-9	127	183	IPR005818	Linker histone H1/H5, domain H15
CDD	cd00073	1.70E-10	128	201	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006334	Biological Process	nucleosome assembly
GO:0000786	Cellular Component	nucleosome
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 317 aa Download sequence Send to blast
MGAPKQKWTA EEESALKAGV VKHGAGKWRT ILKDPEFSSV LYLRSNVDLK DKWRNMSVMA 60 NGWGSREKAR LALKRMQGQS TPKPDENQML LTYGPHSEDE SVDLKPLPSP GVAHQASGSK 120 RTITRLDNLI MEAINELKEP GGSNKTSIGN YIEEQYWAPP NFKRLLSAKL KFFVSSGKLV 180 KVKRKYRMPT SQVSPEKKKS PHPSLNLLEG RSRLPSRIDY DNFNLNDIKT TSRAEIDLEL 240 AKMRNMTAEE AAVAAARAVA EAEAAIAEAE EAAREAEAAE ADAEAAMAFA EAARKTLKGR 300 SGIKTVCSTV PIAACP*

Functional Description ? help Back to Top
Source	Description
UniProt	Binds preferentially double-stranded telomeric repeats. {ECO:0000269\|PubMed:19102728}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015892745.1	1e-109	telomere repeat-binding factor 1
Refseq	XP_015892746.1	1e-109	telomere repeat-binding factor 1
Refseq	XP_015892747.1	1e-109	telomere repeat-binding factor 1
Refseq	XP_024933194.1	1e-109	telomere repeat-binding factor 1
Swissprot	Q8VWK4	4e-91	TRB1_ARATH; Telomere repeat-binding factor 1
TrEMBL	A0A2R6RGW7	1e-109	A0A2R6RGW7_ACTCH; Telomere repeat-binding factor like
STRING	XP_010556012.1	1e-104	(Tarenaya hassleriana)
STRING	VIT_03s0091g01030.t01	1e-104	(Vitis vinifera)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G49950.3	1e-91	telomere repeat binding factor 1

Link Out ? help Back to Top
Phytozome	Kaladp0062s0146.2.p

Publications ? help Back to Top
Alexandrov NN, et al. Features of Arabidopsis genes and genome discovered using full-length cDNAs. Plant Mol. Biol., 2006. 60(1): p. 69-85 [PMID:16463100] Schrumpfová PP, et al. Telomere repeat binding proteins are functional components of Arabidopsis telomeres and interact with telomerase. Plant J., 2014. 77(5): p. 770-81 [PMID:24397874] Liang SC, et al. Kicking against the PRCs - A Domesticated Transposase Antagonises Silencing Mediated by Polycomb Group Proteins and Is an Accessory Component of Polycomb Repressive Complex 2. PLoS Genet., 2015. 11(12): p. e1005660 [PMID:26642436] Fulcher N,Riha K Using Centromere Mediated Genome Elimination to Elucidate the Functional Redundancy of Candidate Telomere Binding Proteins in Arabidopsis thaliana. Front Genet, 2015. 6: p. 349 [PMID:26779251] Kotliński M, et al. Phylogeny-Based Systematization of Arabidopsis Proteins with Histone H1 Globular Domain. Plant Physiol., 2017. 174(1): p. 27-34 [PMID:28298478]