PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kaladp0062s0126.1.p
Organism
Kalanchoe laxiflora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family MYB_related
Protein Properties Length: 264aa    MW: 28707.9 Da    PI: 5.0082
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kaladp0062s0126.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding50.64.4e-162368148
                         TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
      Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                         rg++T+eE++l ++++  lG++ W++Ia+ ++ gRt++++k+ w+++l
  Kaladp0062s0126.1.p 23 RGPFTEEEEKLVIQLHGILGNR-WAAIAAQLP-GRTDNEIKNLWNTHL 68
                         89********************.*********.************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466891.08E-141676IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.602.3E-221872IPR009057Homeodomain-like
PROSITE profilePS5129423.9131872IPR017930Myb domain
SMARTSM007175.9E-152270IPR001005SANT/Myb domain
PfamPF002494.1E-152368IPR001005SANT/Myb domain
CDDcd001671.09E-112568No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 264 aa     Download sequence    Send to blast
MDCEETSNVE IKKWESHQRN IKRGPFTEEE EKLVIQLHGI LGNRWAAIAA QLPGRTDNEI  60
KNLWNTHLKK RLLCMGIDPQ THEPFVTCYG PALAPAAPPS TRHMAQWESA RLEAEARLSR  120
ESLLFGAPTP PSDNPSDHFL RLWNSEVGAA FRFQAKRAGA SSTSSSHHSQ LSSTLKGCCD  180
SVSGTTTEMA STAVTKIQKE EMDTDAVAAA GSASSSSDEL DDSSDSALQL LMDYPFNNDM  240
SFLTDHISDY SSFPSMCPGS SGP*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A2e-13137248108B-MYB
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that may play a role in flower development by repressing ANT (PubMed:19232308). Regulates the transition of meristem identity from vegetative growth to flowering. Acts downstream of LFY and upstream of AP1. Directly activates AP1 to promote floral fate. Together with LFY and AP1 may constitute a regulatory network that contributes to an abrupt and robust meristem identity transition (PubMed:21750030). {ECO:0000269|PubMed:19232308, ECO:0000269|PubMed:21750030}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010661750.13e-94PREDICTED: myb-related protein 308
RefseqXP_010661751.13e-94PREDICTED: myb-related protein 308
SwissprotQ9M2D92e-77MYB17_ARATH; Transcription factor MYB17
TrEMBLD7UC606e-93D7UC60_VITVI; Uncharacterized protein
STRINGVIT_15s0046g03190.t011e-93(Vitis vinifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G61250.17e-69myb domain protein 17