PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Kaladp0062s0049.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
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Family | TCP | ||||||||
Protein Properties | Length: 441aa MW: 49752.7 Da PI: 8.0673 | ||||||||
Description | TCP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | TCP | 132.5 | 3.8e-41 | 127 | 305 | 2 | 133 |
TCP 2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgt.......................... 65 +gkkdrhski+T++g+RdRR+Rls+++a++fFdLq+ LGfdk+s+tieWL++++k ai e +g+ Kaladp0062s0049.1.p 127 TGKKDRHSKICTAQGLRDRRMRLSLQVARKFFDLQETLGFDKASNTIEWLFNMSKNAIMEVMGSdysrmdgpqrsfvdkcgginnptsgn 216 79********************************************************************************99998888 PP TCP 66 ...ssssaseceaesssssasnsssg...................kaaksaakskksqksaasalnlakesrakarararertrekmrik 133 s ++s ce++++ s++ ++++ ++++s+ k+ ks + + k+ r karararert e mr++ Kaladp0062s0049.1.p 217 etkSIAAPSPCEKNEDTYSSKCKQIAtnqttykdeggcnklksvnRQCRSTSKKLKSYQISF-CPRHTKDARDKARARARERTLEIMRLR 305 77633333666555555555534444455566777778888888788888876666666666.577778899*************99876 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03634 | 4.0E-42 | 127 | 302 | IPR005333 | Transcription factor, TCP |
PROSITE profile | PS51369 | 33.575 | 129 | 187 | IPR017887 | Transcription factor TCP subgroup |
PROSITE profile | PS51370 | 9.175 | 284 | 301 | IPR017888 | CYC/TB1, R domain |
Sequence ? help Back to Top |
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Protein Sequence Length: 441 aa Download sequence Send to blast |
MFSSSNSNGD SDCFRQYNGS ISCSSFQFGS TSSPVVLEED QFLVDHLLFM PQEQQKFLFG 60 HEAELPLLDH HDFVDGMIEA GNLIGDQVSN AIPSQNHKKK DGVGSSNYEN KKDSKPVKKP 120 PNKRIRTGKK DRHSKICTAQ GLRDRRMRLS LQVARKFFDL QETLGFDKAS NTIEWLFNMS 180 KNAIMEVMGS DYSRMDGPQR SFVDKCGGIN NPTSGNETKS IAAPSPCEKN EDTYSSKCKQ 240 IATNQTTYKD EGGCNKLKSV NRQCRSTSKK LKSYQISFCP RHTKDARDKA RARARERTLE 300 IMRLRVIQDP DQRLFTTCLE EAAATNPSNI TTFSEQIGSC SPFEQVDEIS GAQSQSLEDL 360 ILHADWEIEG ARFYSSYIFD TTEHHHAVRT TTTAINLVQI KQLKFLTWNE LPENLLYVIK 420 HASAQNGSFN LSSYHFNKNT * |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 110 | 118 | KKDSKPVKK |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G68800.1 | 3e-25 | TCP domain protein 12 |
Link Out ? help Back to Top | |
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Phytozome | Kaladp0062s0049.1.p |