PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kaladp0062s0022.1.p
Organism
Kalanchoe laxiflora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family MYB
Protein Properties Length: 298aa    MW: 33036.5 Da    PI: 6.957
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kaladp0062s0022.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding47.73.7e-153077148
                         TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
      Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                         rg+WT eEd  l+++++  G g+W+  a++ g++Rt+k+c++rw++yl
  Kaladp0062s0022.1.p 30 RGPWTIEEDSMLIHYIACNGEGRWNMLAKCAGLKRTGKSCRLRWLNYL 77
                         89********************************************97 PP
2Myb_DNA-binding50.35.5e-1683126146
                          TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
      Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                          rg+ +++E++l+++++ ++G++ W++Ia++++ gRt++++k++w++
  Kaladp0062s0022.1.p  83 RGNLSPQEQLLILELHSKWGNR-WSKIAQHLP-GRTDNEIKNFWRT 126
                          7899******************.*********.***********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129414.7492577IPR017930Myb domain
SuperFamilySSF466898.99E-3028124IPR009057Homeodomain-like
SMARTSM007172.8E-112979IPR001005SANT/Myb domain
PfamPF002492.7E-133077IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.605.0E-213184IPR009057Homeodomain-like
CDDcd001671.38E-93277No hitNo description
PROSITE profilePS5129424.5178132IPR017930Myb domain
SMARTSM007171.1E-1482130IPR001005SANT/Myb domain
PfamPF002494.2E-1583126IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.604.0E-2385131IPR009057Homeodomain-like
CDDcd001671.01E-1187126No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009686Biological Processgibberellin biosynthetic process
GO:0009751Biological Processresponse to salicylic acid
GO:0016036Biological Processcellular response to phosphate starvation
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 298 aa     Download sequence    Send to blast
MSGGSVTNNG QGTKTSSMSN IEEDEAELRR GPWTIEEDSM LIHYIACNGE GRWNMLAKCA  60
GLKRTGKSCR LRWLNYLKPD VKRGNLSPQE QLLILELHSK WGNRWSKIAQ HLPGRTDNEI  120
KNFWRTRVQK QARRLNPDTT ADHQQLALPA FSQTNSSASS LAMSAQEHNI IPNVSNMSPP  180
RSWHHIFSPN HATTLLGESS SSSFPQPGVA DHHQTTTTTS PGNVITYGNS LYMDNGGNPL  240
FHNEGCYYVD NTHAADASGG FGLGDASVAP SGRRDWVLDD EVANSMWNNT DELWQFR*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A6e-24271324108B-MYB
1gv2_A5e-24271321105MYB PROTO-ONCOGENE PROTEIN
1h88_C2e-232713255159MYB PROTO-ONCOGENE PROTEIN
1h89_C2e-232713255159MYB PROTO-ONCOGENE PROTEIN
1h8a_C8e-242713224128MYB TRANSFORMING PROTEIN
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00216DAPTransfer from AT1G68320Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027154094.13e-79transcription factor MYB62
TrEMBLA0A1R3GXC94e-78A0A1R3GXC9_COCAP; Uncharacterized protein
TrEMBLA0A2N9FPI33e-78A0A2N9FPI3_FAGSY; Uncharacterized protein
STRINGPOPTR_0010s13290.11e-77(Populus trichocarpa)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68320.12e-71myb domain protein 62