PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kaladp0061s0050.1.p
Organism
Kalanchoe laxiflora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family NAC
Protein Properties Length: 550aa    MW: 61540.5 Da    PI: 4.53
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kaladp0061s0050.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM166.21.1e-5191361128
                  NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.k.kvkaeekewyfFskrdkkyatgkrknratksgyWkatgk 88 
                          l+pGfrFhPtdeelv +yL++k+ gk +++ ++i+ +d+yk+ePw+Lp k k+k+++ ewyfFs  d+ky +g+++nrat++gyWk+tgk
  Kaladp0061s0050.1.p   9 LAPGFRFHPTDEELVRYYLRRKICGKGFRF-DAIAATDVYKSEPWELPgKsKLKSRDLEWYFFSMLDRKYGNGSKTNRATENGYWKTTGK 97 
                          579**************************9.99***************6347777888******************************** PP

                  NAM  89 dkevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128
                          d++vl+ k ++vg+kktLv+++grap+g +++Wvmheyrl
  Kaladp0061s0050.1.p  98 DRPVLH-KAKTVGMKKTLVYHRGRAPHGARSNWVMHEYRL 136
                          ******.9999***************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019413.66E-616159IPR003441NAC domain
PROSITE profilePS5100557.2089159IPR003441NAC domain
PfamPF023655.8E-2811136IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 550 aa     Download sequence    Send to blast
MGRKPATSLA PGFRFHPTDE ELVRYYLRRK ICGKGFRFDA IAATDVYKSE PWELPGKSKL  60
KSRDLEWYFF SMLDRKYGNG SKTNRATENG YWKTTGKDRP VLHKAKTVGM KKTLVYHRGR  120
APHGARSNWV MHEYRLIDED LEKAGVLQDA FVLCRIFQKS GSGPKNGEQY GAPFEEEEWD  180
DDEVATVPGE QLTNEVVVFD NPYPEVGDVN TDADELVQNN YDISPSAPPP FDYCDDSGSY  240
LFDDQKPFIG TRENYESNLV DGESCFDVLN FPEPCEGEVK QVKVEHLVDS GENPLDASYL  300
LDEHYLNANQ EPVLNEGLFL ETDDLINQME PGPSDFDMLD EYLKYFDSAD SNSTYVLPEN  360
GALPQTESQV VATKSLLTPE QVDKEIEYLA LKSQQLPDAQ GSDVASSSSQ CPEDTKFNSD  420
YKHQFVNMLG KKPSPYSFST KDASLRLASS SHSSSSIHVT AGMVQIRNTD AFGNRLSWTF  480
NKNGNIEVVL SLALPQTDGN STSVDMLANM LSGKASSAMA RVWFYLIVFW VFIISISFKI  540
ASLVSTKQG*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A6e-47816516171NO APICAL MERISTEM PROTEIN
1ut4_B6e-47816516171NO APICAL MERISTEM PROTEIN
1ut7_A6e-47816516171NO APICAL MERISTEM PROTEIN
1ut7_B6e-47816516171NO APICAL MERISTEM PROTEIN
3swm_A5e-47816519174NAC domain-containing protein 19
3swm_B5e-47816519174NAC domain-containing protein 19
3swm_C5e-47816519174NAC domain-containing protein 19
3swm_D5e-47816519174NAC domain-containing protein 19
3swp_A5e-47816519174NAC domain-containing protein 19
3swp_B5e-47816519174NAC domain-containing protein 19
3swp_C5e-47816519174NAC domain-containing protein 19
3swp_D5e-47816519174NAC domain-containing protein 19
4dul_A6e-47816516171NAC domain-containing protein 19
4dul_B6e-47816516171NAC domain-containing protein 19
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028125950.10.0NAC domain-containing protein 78-like
TrEMBLA0A161CG381e-180A0A161CG38_MORAL; NAC domain containing transcription factor 78-like protein
STRINGVIT_13s0019g05240.t011e-179(Vitis vinifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G04410.11e-134NAC domain containing protein 2