PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kaladp0060s0221.1.p
Organism
Kalanchoe laxiflora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family CPP
Protein Properties Length: 775aa    MW: 84859.8 Da    PI: 6.7134
Description CPP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kaladp0060s0221.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCR49.58.6e-16479517240
                  TCR   2 ekkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNke 40 
                          ++k+CnCkkskClk+YCeCfaag++C e C+C+dC Nk 
  Kaladp0060s0221.1.p 479 SCKRCNCKKSKCLKLYCECFAAGVYCIEPCSCQDCYNKP 517
                          689**********************************96 PP
2TCR48.91.3e-15564603140
                  TCR   1 kekkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNke 40 
                          ++k+gCnCkks+ClkkYCeC++ g+ Cs +C+Ce+CkN+ 
  Kaladp0060s0221.1.p 564 RHKRGCNCKKSSCLKKYCECYQGGVGCSLNCRCESCKNTF 603
                          589***********************************85 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM011143.7E-17478519IPR033467Tesmin/TSO1-like CXC domain
PROSITE profilePS5163437.11479604IPR005172CRC domain
PfamPF036381.5E-11481516IPR005172CRC domain
SMARTSM011146.1E-16564605IPR033467Tesmin/TSO1-like CXC domain
PfamPF036382.4E-11566602IPR005172CRC domain
Sequence ? help Back to Top
Protein Sequence    Length: 775 aa     Download sequence    Send to blast
MCVEEHVLAS AWILRRRTES GLLGRKSSLS PIKQVKSIHI SQSFTSLNLT SPSSVFTSPH  60
VVSSFKDSTF LKRHRFADQS RTDDFDEGTK DSSKGEFVGS FQLPENSVKK DFDLEHPVAE  120
VNNNRDEQSE VPEVLPRTLD YDNDTPASES KSRVFIDQRD AGSAEASGLL GPFSQGTVRE  180
SSDRSDGVPG TFEDTPHRER LRLHWDNLST DATDLLVMDS PSETRAFRGL FDKTPNTGEN  240
PGSLASLFPD STNELQLAQP FCQVETVGVE MGQQVNPAEH SWLQNLDSPP ESIPCGLEEG  300
THNNSSDGQL GSTSHQGVHR RCLTFETFGG HRESLSSVAT RLPSVPLQPE EKGTSRFKQP  360
GPSKPVSAYP LQRVKPGIGL HLNALAAAKD ENISVPENLP PGVEIRVSSS TTPFCPAASQ  420
DSLRVPLDTA SYLEDAGPLR MDTQTSEDDS IAIAPSEELS STSPKKKRPK LTHAEDDESC  480
KRCNCKKSKC LKLYCECFAA GVYCIEPCSC QDCYNKPIHE DTVLATRKQI EARNPLAFAP  540
KVIRAAQAVP DVGDEMANTP ASARHKRGCN CKKSSCLKKY CECYQGGVGC SLNCRCESCK  600
NTFGRKDGSE VDLEVEVKTE EEEPRPTEKG IGDRQKAVVH INEEQILDPS FPSTPSRLSR  660
LSVKLQFPSK GKPMRSSFLS IGSSAGSQNE TRGVKLSSIP LPPKFEQSIQ TAHAEEMPEL  720
LQNQGSPRNT VKSNSPNGKR VSPPQCKSRP SPSRRSTRRL ILQAIPSHPS MNQQ*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5fd3_A1e-1648360114120Protein lin-54 homolog
5fd3_B1e-1648360114120Protein lin-54 homolog
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1463470PKKKRPKL
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G14770.14e-95TESMIN/TSO1-like CXC 2