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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Kaladp0060s0084.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
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Family | GRAS | ||||||||
Protein Properties | Length: 601aa MW: 65532.1 Da PI: 4.8756 | ||||||||
Description | GRAS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GRAS | 347.4 | 2.3e-106 | 235 | 600 | 4 | 374 |
GRAS 4 lLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkf 93 ++l+cA++v+s + e+a ++L++l + +s++gdp++R++++f+eAL +r ++ + + ++s ++s+e + ++k++++++P+ kf Kaladp0060s0084.1.p 235 AVLDCARVVDS-EPERAVNTLTQLLKSVSETGDPIERVTFHFAEALCNRASH------RPGNLLTASGTTSEEFTVSYKALNDACPYSKF 317 5789***8887.7889999********************************9......444555555555999***************** PP GRAS 94 shltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegpp.slRiTgvgspesg..skeeleetgerLakfAeelgvpfefnv 180 +hltaNqaIlea+e+++++Hi+Df+i qG+QW+aLlqaLa+R++g+p +++i g+ +p+ g +l++tg+rL++fA+ l+++fef++ Kaladp0060s0084.1.p 318 AHLTANQAILEATEKAQKIHIVDFGIVQGVQWAALLQALATRTNGKPsRIKISGIPAPALGpsPVAALSATGNRLSEFAKLLDLNFEFEP 407 *******************************************887779*********99999999************************ PP GRAS 181 lvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfds 270 v +++l+ ++++v+p+E++aVn++lql++llde+ + +vL+l +slsP +v++ e ea +n+ +F+er+ +al +y+alf+s Kaladp0060s0084.1.p 408 -VLAPMSELSESSFKVEPDESVAVNFMLQLYNLLDETPMAVE---TVLRLARSLSPSIVTLGEYEARLNQVPFVERVKNALTHYTALFES 493 .7999*****************************99888888...9******************************************** PP GRAS 271 leaklpreseerikvErellgreivnvvacegae.rrerhetlekWrerleeaGFkpvplsekaakqaklllrkvk.sdgyrveeesgsl 358 le ++ r+s +ri +E+ llg++i v+ e+ +rer+e W+ +e+aGF pv+ls++a +qak ll +++ + y++ e+ ++ Kaladp0060s0084.1.p 494 LEPNFKRDSADRIQLEKSLLGQRIAGVIGPEEPGvKRERMEDRDGWKLLMESAGFVPVKLSHYAISQAKILLWNYNyNSQYSIVESPPAF 583 ******************************999889****************************************9999******9999 PP GRAS 359 v.lgWkdrpLvsvSaWr 374 + l W++ p++svS+Wr Kaladp0060s0084.1.p 584 LsLAWRELPVLSVSSWR 600 99**************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50985 | 56.57 | 206 | 578 | IPR005202 | Transcription factor GRAS |
Pfam | PF03514 | 8.0E-104 | 235 | 600 | IPR005202 | Transcription factor GRAS |
Sequence ? help Back to Top |
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Protein Sequence Length: 601 aa Download sequence Send to blast |
MAYLCGDSGN LMAIAQQIQQ KEQQDQHNLH PIHHQQDHNH YQQQPQPQQL QLVGVNPFAM 60 ANTWTASASQ LGYGLAGSGF PDQFPVAGAD AAGEGMFPFS NPMEFKFTEF DSADWIMEGL 120 IGSGEPPTAG YETWQSQPDF NHLYAADPFA APPPGDLTPL IFSAPSKTDG SVQPQEPICA 180 PLPAPPSPPR PPHVDKEVTV APPPPAPKSQ KTVISRSNTG PSDAEQSTPP PLLIAVLDCA 240 RVVDSEPERA VNTLTQLLKS VSETGDPIER VTFHFAEALC NRASHRPGNL LTASGTTSEE 300 FTVSYKALND ACPYSKFAHL TANQAILEAT EKAQKIHIVD FGIVQGVQWA ALLQALATRT 360 NGKPSRIKIS GIPAPALGPS PVAALSATGN RLSEFAKLLD LNFEFEPVLA PMSELSESSF 420 KVEPDESVAV NFMLQLYNLL DETPMAVETV LRLARSLSPS IVTLGEYEAR LNQVPFVERV 480 KNALTHYTAL FESLEPNFKR DSADRIQLEK SLLGQRIAGV IGPEEPGVKR ERMEDRDGWK 540 LLMESAGFVP VKLSHYAISQ AKILLWNYNY NSQYSIVESP PAFLSLAWRE LPVLSVSSWR 600 * |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5hyz_A | 1e-144 | 231 | 600 | 3 | 375 | GRAS family transcription factor containing protein, expressed |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor involved in plant development (By similarity). Involved in environmental abiotic stress resistance. May increase the expression of stress-responsive genes (PubMed:20616154). Binds DNA in vitro (By similarity). {ECO:0000250|UniProtKB:Q53K16, ECO:0000250|UniProtKB:Q9SCR0, ECO:0000269|PubMed:20616154}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Up-regulated by drought and high salt stresses, and down-regulated by gibberellic acid (GA) treatment, but not by plant hormone abscisic acid (ABA) application in leaves. Under the salt treatment, expression is induced quickly, and it peaks at 3 hours. Under the drought treatment, the expression is not induced immediately, but reaches its maximum at 3 hours. Under the GA treatment, the expression becomes weaker within 5 hours. {ECO:0000269|PubMed:20616154}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_002267140.1 | 0.0 | PREDICTED: scarecrow-like protein 4 | ||||
Refseq | XP_015889931.1 | 0.0 | SCARECROW-LIKE protein 7 isoform X2 | ||||
Swissprot | A0A024B7I0 | 0.0 | SCL7_POPEU; SCARECROW-LIKE protein 7 | ||||
TrEMBL | A0A438CHG1 | 0.0 | A0A438CHG1_VITVI; Scarecrow-like protein 4 | ||||
STRING | EOX91113 | 0.0 | (Theobroma cacao) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G66770.1 | 1e-174 | GRAS family protein |
Link Out ? help Back to Top | |
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Phytozome | Kaladp0060s0084.1.p |