PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kaladp0059s0149.1.p
Organism
Kalanchoe laxiflora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family MYB_related
Protein Properties Length: 281aa    MW: 31213.4 Da    PI: 10.3716
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kaladp0059s0149.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding34.83.8e-11756347
                         SS-HHHHHHHHHHHHHTTTT-HHHHHHHHT.....TTS-HHHHHHHHHHH CS
      Myb_DNA-binding  3 rWTteEdellvdavkqlGggtWktIartmg.....kgRtlkqcksrwqky 47
                         +WT++E+  l+ +++++G+g Wk I r        ++R+  ++k++w+++
  Kaladp0059s0149.1.p  7 KWTADEEAALLAGIAKHGPGKWKIILRDTDfatplQNRSNIDLKDKWRNL 56
                         8***********************************************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129412.879161IPR017930Myb domain
SMARTSM007177.3E-7459IPR001005SANT/Myb domain
SuperFamilySSF466897.9E-14558IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.606.9E-12556IPR009057Homeodomain-like
CDDcd116601.38E-17656No hitNo description
PfamPF002491.3E-7756IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.105.8E-11116181IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM005263.6E-9117182IPR005818Linker histone H1/H5, domain H15
SuperFamilySSF467856.53E-12118195IPR011991Winged helix-turn-helix DNA-binding domain
PROSITE profilePS5150419.223119187IPR005818Linker histone H1/H5, domain H15
PfamPF005388.7E-9124180IPR005818Linker histone H1/H5, domain H15
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006334Biological Processnucleosome assembly
GO:0000786Cellular Componentnucleosome
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 281 aa     Download sequence    Send to blast
MVNQKIKWTA DEEAALLAGI AKHGPGKWKI ILRDTDFATP LQNRSNIDLK DKWRNLSASS  60
NGERRRSSKS SYLLPAALSS TTNEPSHTPA LLTAPTAARD ETTDAAKIYG RSDSRKSKTA  120
LGFNAMIFDA LKASNNSKGS DIRMIVNYIE ERYETPPNLK RLIGSKLRKL VARGKLNKTE  180
NLYTIRNASV ARSKRLILEQ KQIKTHHSSS REACRWLKSL SEASKTAAYK IAAAESKSFQ  240
ADEAFNEADR ASKLAEESDC FLEIAKDIFE RCSRGQAVYI *
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72740.23e-47MYB_related family protein