PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe

Family

MYB

Protein Properties

Length: 270aa MW: 30813.7 Da PI: 9.5661

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Kaladp0059s0055.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	31.3	4.7e-10	21	66	3	46
SS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrwqk 46 WT eE +l+ a + + ++ +W+++a++++ g++ k+++s + Kaladp0059s0055.1.p 21 YWTREENKLFESALAIYDKNtpdRWEKVAQMIP-GKSVKDVISQYKE 66 6******************************.*******9975 PP
2	Myb_DNA-binding	42.2	1.9e-13	119	164	2	47
SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 ++WT++E+ +++ + ++G+g+W++I+r + +t+ q+ s+ qky Kaladp0059s0055.1.p 119 LPWTEDEHRRFLMGLLKHGKGDWRSISRNFVASKTPTQVASHAQKY 164 69***************************99**********9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	1.2E-4	15	67	IPR009057	Homeodomain-like
PROSITE profile	PS51293	10.598	17	70	IPR017884	SANT domain
SMART	SM00717	1.5E-10	18	70	IPR001005	SANT/Myb domain
SuperFamily	SSF46689	2.39E-13	20	76	IPR009057	Homeodomain-like
Pfam	PF00249	2.1E-8	21	66	IPR001005	SANT/Myb domain
CDD	cd00167	4.57E-9	22	67	No hit	No description
PROSITE profile	PS51294	16.276	113	169	IPR017930	Myb domain
SuperFamily	SSF46689	3.74E-16	115	169	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	1.6E-16	116	167	IPR006447	Myb domain, plants
SMART	SM00717	1.5E-9	117	167	IPR001005	SANT/Myb domain
Gene3D	G3DSA:1.10.10.60	1.3E-9	119	163	IPR009057	Homeodomain-like
Pfam	PF00249	1.0E-10	120	164	IPR001005	SANT/Myb domain
CDD	cd00167	2.67E-8	120	165	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 270 aa Download sequence Send to blast
MYQTFQLQNS NWLPQKSHSS YWTREENKLF ESALAIYDKN TPDRWEKVAQ MIPGKSVKDV 60 ISQYKELEDD VINIEAGLVP TPGYLTSSFT LELGDDRDFD VLRKKSRARS ADREKKKGLP 120 WTEDEHRRFL MGLLKHGKGD WRSISRNFVA SKTPTQVASH AQKYFLRLNS GLKDKRRPSI 180 HDITTTNLSN APPSHDSGLA AFDQFVVLPP REKEQNVALD WNQHGNLSVM GFEPNLPPAP 240 YESLYGYGIH VGSHNPMFEV QSARQRIRG*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
2cjj_A	8e-16	22	97	11	86	RADIALIS
Search in ModeBase

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	102	116	RKKSRARSADREKKK

Functional Description ? help Back to Top
Source	Description
UniProt	Involved in the dorsovental asymmetry of flowers. Promotes ventral identity. {ECO:0000269\|PubMed:11937495, ECO:0000269\|PubMed:9118809}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_018821689.1	1e-104	PREDICTED: transcription factor DIVARICATA-like
Swissprot	Q8S9H7	6e-80	DIV_ANTMA; Transcription factor DIVARICATA
TrEMBL	A0A2N9H1W5	1e-107	A0A2N9H1W5_FAGSY; Uncharacterized protein
STRING	VIT_13s0019g03370.t01	1e-102	(Vitis vinifera)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G38090.1	7e-83	MYB family protein

Link Out ? help Back to Top
Phytozome	Kaladp0059s0055.1.p

Publications ? help Back to Top
Galego L,Almeida J Role of DIVARICATA in the control of dorsoventral asymmetry in Antirrhinum flowers. Genes Dev., 2002. 16(7): p. 880-91 [PMID:11937495] Almeida J,Rocheta M,Galego L Genetic control of flower shape in Antirrhinum majus. Development, 1997. 124(7): p. 1387-92 [PMID:9118809]