PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kaladp0058s0641.3.p
Organism
Kalanchoe laxiflora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family MYB_related
Protein Properties Length: 188aa    MW: 21503.7 Da    PI: 4.8245
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kaladp0058s0641.3.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding49.97.2e-16243548
                         -HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
      Myb_DNA-binding  5 TteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                         T+ E+ l +++++++G++ W++Iar+++ gRt++++k++w++++
  Kaladp0058s0641.3.p  2 TAHEERLVLELHAKWGNR-WSRIARKLP-GRTDNEIKNYWRTHM 43
                         99****************.*********.************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129424.14147IPR017930Myb domain
SMARTSM007173.5E-11145IPR001005SANT/Myb domain
CDDcd001672.33E-12143No hitNo description
PfamPF002491.8E-13242IPR001005SANT/Myb domain
SuperFamilySSF466891.64E-12252IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.602.8E-19244IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009723Biological Processresponse to ethylene
GO:0009739Biological Processresponse to gibberellin
GO:0009751Biological Processresponse to salicylic acid
GO:0009753Biological Processresponse to jasmonic acid
GO:0010200Biological Processresponse to chitin
GO:0046686Biological Processresponse to cadmium ion
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 188 aa     Download sequence    Send to blast
MTAHEERLVL ELHAKWGNRW SRIARKLPGR TDNEIKNYWR THMRKKAQEQ KQTITPSTAL  60
SDSSSSSNPT QESLSPDREK ESFYDAVGFD AEFSLNGNKQ AEELVDRVYS MDDIWEDIDK  120
AKESHISQLY NSFNEGSSLY CPMTVSPVRD YCSGSLWKMD DGESKMFLPS TNQFPSYYDL  180
SEAPSYG*
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00600PBMTransfer from AT5G59780Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019076057.11e-54PREDICTED: transcription factor MYB59
TrEMBLA0A438G1I02e-53A0A438G1I0_VITVI; Transcription factor MYB59
TrEMBLF6GV452e-53F6GV45_VITVI; Uncharacterized protein
STRINGVIT_06s0004g04140.t014e-54(Vitis vinifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G59780.17e-40myb domain protein 59