PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Kaladp0058s0013.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
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Family | B3 | ||||||||
Protein Properties | Length: 106aa MW: 12062.8 Da PI: 7.1431 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 43.4 | 6.2e-14 | 22 | 96 | 14 | 97 |
T-EE--HHH.HTT.---..--SEEEEEE.TTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE CS B3 14 grlvlpkkfaeeh.ggkkeesktltled.esgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvf 97 + + +p f+ ++ +g k ++ + l++ + g+ W vk+ ++++ +l+ GW+eF+ ++L +gDfvvF+++g+ f v+vf Kaladp0058s0013.1.p 22 KDFLIPTAFF-KYlNGRK-CE-QALLRSsRGGEPWPVKI--NGRR---ILE-GWEEFAAHHHLHVGDFVVFRYEGDLVF--DVTVF 96 4589******.5646554.43.4666663777*******..7776...455.*********************997666..66665 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.40.330.10 | 7.2E-19 | 6 | 101 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 1.96E-18 | 7 | 105 | IPR015300 | DNA-binding pseudobarrel domain |
PROSITE profile | PS50863 | 12.252 | 9 | 99 | IPR003340 | B3 DNA binding domain |
CDD | cd10017 | 1.66E-14 | 10 | 96 | No hit | No description |
SMART | SM01019 | 3.3E-8 | 12 | 99 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 1.3E-10 | 21 | 89 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 106 aa Download sequence Send to blast |
MVDTKAPEKP HLLQPVLPGH TKDFLIPTAF FKYLNGRKCE QALLRSSRGG EPWPVKINGR 60 RILEGWEEFA AHHHLHVGDF VVFRYEGDLV FDVTVFGPNS CEKEY* |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_021670204.1 | 1e-36 | putative B3 domain-containing protein REM15 isoform X1 | ||||
Swissprot | P0DH85 | 9e-26 | REM10_ARATH; B3 domain-containing protein REM10 | ||||
TrEMBL | B9RNP9 | 1e-34 | B9RNP9_RICCO; Uncharacterized protein | ||||
STRING | XP_002515368.1 | 2e-35 | (Ricinus communis) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G24700.1 | 4e-28 | B3 family protein |
Link Out ? help Back to Top | |
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Phytozome | Kaladp0058s0013.1.p |
Publications ? help Back to Top | |||
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