PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kaladp0056s0082.1.p
Organism
Kalanchoe laxiflora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family TALE
Protein Properties Length: 804aa    MW: 87976.2 Da    PI: 7.1677
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kaladp0056s0082.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox29.41.4e-096016381954
                          HHH..SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS
             Homeobox  19 Fek..nrypsaeereeLAkklgLterqVkvWFqNrRak 54 
                          Fe   ++yp+ +++  LA+++gLt +qV++WF N R +
  Kaladp0056s0082.1.p 601 FEHflHPYPTDTDKHMLATQTGLTRSQVSNWFINARVR 638
                          554459******************************88 PP
2BELL96.32.7e-31457527272
                 BELL   2 rqelqkkkakLlslleeVdkrYkqyveqlqtvissFeavaglgsakpYtslAlkaiSrhFrcLkdaiaeqi 72 
                          r + q kkakLl++leeV +rYk y++q+q+v+s+Fe vagl +a+pY+s Al+ +SrhF  Lk+ai++q+
  Kaladp0056s0082.1.p 457 RPNYQLKKAKLLHMLEEVSRRYKLYYQQMQMVVSAFESVAGLTAAAPYISSALNSVSRHFTHLKNAISDQL 527
                          56789***************************************************************997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005744.5E-39363525IPR006563POX domain
PfamPF075263.6E-37368524IPR006563POX domain
PROSITE profilePS5007111.969579642IPR001356Homeobox domain
SMARTSM003891.6E-9582646IPR001356Homeobox domain
CDDcd000869.38E-13582643No hitNo description
SuperFamilySSF466896.42E-17584648IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.4E-28585646IPR009057Homeodomain-like
PfamPF059204.4E-18599638IPR008422Homeobox KN domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 804 aa     Download sequence    Send to blast
MDSTMNNFIS DQLHVAQQSR REKLRVQHCS PSRSGHRVDD YTSSMEVVNH VFDPAPIQVG  60
EDNVRNAGDL VCHHPTRISS ELLLDFSGNI CHNVRLSGAE EQASSFAGNS SGNPVSSNAD  120
GSLKPRRENY LEHCGVWKSV GPNSNSGNWN MDYLGRYRKN TSVGLASDLS ALGMRAKHNT  180
TTGHRQNQMN FDPQLSYQSA LSDEVTTAVV GLQPNNGVRG STAFVSWGSY GGDHEHVRAV  240
PHVYHQLDGD RLLGGSTWNG EMSFPHSRID PMVVDSHSQG LSLSLCSNPA ASMINGSQFG  300
DAHIIPQSIP LSTVANISCE DSKPLSPTNL VRPASVGQGS SLQEPVGASA NYHRQTGPLG  360
PFTGYAAILK SSRFLKPAQQ LLDEYCGVIG KLASGSTGVA SDRNTNQAGD LATAVNSIES  420
EVGTSGDILG VSTSRHLDSN EIIKGPTSSP GPEEAQRPNY QLKKAKLLHM LEEVSRRYKL  480
YYQQMQMVVS AFESVAGLTA AAPYISSALN SVSRHFTHLK NAISDQLRHI KTFLGEDFAL  540
PGIIRNKEDL NAKRFKYTDH GFQRLKSGGS NMGLLEPQQH IWRPQRGLPE RAVSVLRAWL  600
FEHFLHPYPT DTDKHMLATQ TGLTRSQVSN WFINARVRLW KPMVEEIHML ETKGLAEMDS  660
HTVADDNVST NGADPHLKAD HSLSKMVGKT SVPGNLECSK MGSLSEMGDY QAAKQWNQEN  720
QSRVVNGDMT SMGEGMMSIS GYHQTGLEMG GMGSVSLTLG LRQSADQMYR LEDGQRQPTT  780
FFQQQRDRMR QHLGGHTVHE YAG*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4xrs_A8e-17588645158Homeobox protein Meis1
4xrs_B8e-17588645158Homeobox protein Meis1
5bng_A1e-16588646159Homeobox protein Meis2
5bng_B1e-16588646159Homeobox protein Meis2
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G27990.15e-83BEL1-like homeodomain 8