PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kaladp0055s0138.1.p
Organism
Kalanchoe laxiflora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family ERF
Protein Properties Length: 617aa    MW: 69158.9 Da    PI: 10.8492
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kaladp0055s0138.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP247.64.2e-153079154
                  AP2  1 sgykGVrwdkkrgrWvAeIrd.psengkrkrfslgkfgtaeeAakaaiaarkkle 54
                         ++++G+r ++ +gr++AeIrd ++    ++r++lg+f++ e A +a++ a+++l+
  Kaladp0055s0138.1.p 30 PKFRGIRERP-WGRFAAEIRDpWK----KTRVWLGTFDSVEAATRAYDTAARSLR 79
                         79*****888.**********883....5**********************9986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000184.49E-253088No hitNo description
PfamPF008477.7E-93079IPR001471AP2/ERF domain
SuperFamilySSF541713.47E-183189IPR016177DNA-binding domain
PROSITE profilePS5103221.143188IPR001471AP2/ERF domain
SMARTSM003803.6E-313194IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.102.1E-273188IPR001471AP2/ERF domain
PRINTSPR003679.2E-83243IPR001471AP2/ERF domain
PRINTSPR003679.2E-85470IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 617 aa     Download sequence    Send to blast
MGKVRGGATA AASLGNQVKD APLEIGSAEP KFRGIRERPW GRFAAEIRDP WKKTRVWLGT  60
FDSVEAATRA YDTAARSLRC PKARTNFPTP PSSSIVFIFH RVAFEPSSSI VFMFGVVFES  120
SSSSSELSSN ISKFNSSSSS YLRRLSSPKS VSPPSSIRLC TFRRPFELVS LRRKGIPRTS  180
SEKGTTGHKD LTLKDSEKEN SGSNSGPKDL TPEGFGKGKT GIRRSSRAGR YTFKNISKNP  240
TETIILDADD SEKGKVIAES SKAVHKRKGP IKKGVVIAES INAMHNQDSD SDFETLTLIN  300
LVPKQKKRKV STTGASTFSQ TLDKSKLGDD VDRKRKGKKR VDEDDSCKID LSHITPYQYP  360
CRFKTRCTPQ RLHQILGNLT EQHRRGIKEL GFGSILDFRF WELHSRFGRW LVESFDATRC  420
TLDMKIGRLH ITIDDIERIL GLPKAGQLFK RVGDRGGAGA DLALEDRIIG PLPTVEADRS  480
VVLGEKPNLL FTSTIVEGMK NGFTNQKILN VINDPNEAKK MNWCQYVLDS LQDGKVKWTE  540
NSKKSSFLLY VQLVRPPAHM NSLSQMKTAY HRWRGPTQAH RSRTRGRRFP ERTTAFHVEG  600
NSFALKRERH RLVKQR*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A2e-162588872Ethylene-responsive transcription factor ERF096
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G50640.12e-28ethylene responsive element binding factor 3