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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Kaladp0053s0486.3.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
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Family | CAMTA | ||||||||
Protein Properties | Length: 1069aa MW: 119372 Da PI: 5.6012 | ||||||||
Description | CAMTA family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | CG-1 | 179 | 5.7e-56 | 21 | 137 | 2 | 118 |
CG-1 2 lkekkrwlkneeiaaiLenfekheltlelktrpksgsliLynrkkvryfrkDGyswkkkkdgktvrEdhekLKvggvevlycyYahseen 91 l+ ++rwl++ ei++iL+n++++++ e++++p+sgsl+L++rk++ryfrkDG++w+kkkdgktv+E+he+LK g+v+vl+cyYah+e n Kaladp0053s0486.3.p 21 LEAQHRWLRPAEICEILQNYKSFRICPEPADKPPSGSLFLFDRKVLRYFRKDGHNWRKKKDGKTVKEAHERLKAGSVDVLHCYYAHGEAN 110 5679************************************************************************************** PP CG-1 92 ptfqrrcywlLeeelekivlvhylevk 118 ++fqrr+yw+Lee+l++ivlvhy++vk Kaladp0053s0486.3.p 111 ESFQRRSYWMLEESLSHIVLVHYRDVK 137 ************************985 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51437 | 82.195 | 16 | 142 | IPR005559 | CG-1 DNA-binding domain |
SMART | SM01076 | 7.2E-78 | 19 | 137 | IPR005559 | CG-1 DNA-binding domain |
Pfam | PF03859 | 2.4E-49 | 22 | 136 | IPR005559 | CG-1 DNA-binding domain |
Pfam | PF01833 | 1.4E-4 | 484 | 562 | IPR002909 | IPT domain |
SuperFamily | SSF81296 | 7.0E-17 | 484 | 570 | IPR014756 | Immunoglobulin E-set |
CDD | cd00204 | 4.78E-13 | 668 | 776 | No hit | No description |
Gene3D | G3DSA:1.25.40.20 | 2.0E-16 | 674 | 779 | IPR020683 | Ankyrin repeat-containing domain |
PROSITE profile | PS50297 | 16.547 | 675 | 788 | IPR020683 | Ankyrin repeat-containing domain |
SuperFamily | SSF48403 | 3.58E-17 | 675 | 779 | IPR020683 | Ankyrin repeat-containing domain |
Pfam | PF12796 | 3.0E-6 | 689 | 779 | IPR020683 | Ankyrin repeat-containing domain |
PROSITE profile | PS50088 | 9.324 | 717 | 749 | IPR002110 | Ankyrin repeat |
SMART | SM00248 | 0.22 | 717 | 746 | IPR002110 | Ankyrin repeat |
SMART | SM00248 | 800 | 756 | 785 | IPR002110 | Ankyrin repeat |
SuperFamily | SSF52540 | 2.55E-7 | 841 | 938 | IPR027417 | P-loop containing nucleoside triphosphate hydrolase |
SMART | SM00015 | 17 | 887 | 909 | IPR000048 | IQ motif, EF-hand binding site |
PROSITE profile | PS50096 | 7.766 | 890 | 917 | IPR000048 | IQ motif, EF-hand binding site |
Pfam | PF00612 | 0.0018 | 890 | 908 | IPR000048 | IQ motif, EF-hand binding site |
SMART | SM00015 | 0.0069 | 910 | 932 | IPR000048 | IQ motif, EF-hand binding site |
PROSITE profile | PS50096 | 9.304 | 911 | 935 | IPR000048 | IQ motif, EF-hand binding site |
Pfam | PF00612 | 2.4E-4 | 913 | 932 | IPR000048 | IQ motif, EF-hand binding site |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009409 | Biological Process | response to cold | ||||
GO:0010150 | Biological Process | leaf senescence | ||||
GO:0042742 | Biological Process | defense response to bacterium | ||||
GO:0050832 | Biological Process | defense response to fungus | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0005516 | Molecular Function | calmodulin binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 1069 aa Download sequence Send to blast |
MDSNSRRHVL GNQLDIEQIL LEAQHRWLRP AEICEILQNY KSFRICPEPA DKPPSGSLFL 60 FDRKVLRYFR KDGHNWRKKK DGKTVKEAHE RLKAGSVDVL HCYYAHGEAN ESFQRRSYWM 120 LEESLSHIVL VHYRDVKGNR TSISRTRENV ERSHAAWEAG DNLSESEISN SASSSMQRSS 180 YQNHSPTIDT SLSSMHASQY EDAESAYNDL NSSRHHSLFE VQTHVNGNLV GSSNTYYTVS 240 NYQDKRSDYG GVDITSLTRA GTSEDGAGLG YERQKHNDFP SWEHVLKNCA GEIPSMGFES 300 SLLSARPDNT GNIFKQESHK LGQLMTDGFT NKQEIASDVQ YQGEWLTSDG FSSDLSKWPL 360 DIEYNSNADG QETGSLNLLG SMESSHSHPN EPDEPPKLEP QGMKHPLLQG PVNEDGLRKL 420 DSFNRWMSKE LGDVDDSIVQ SSSGAYWSAV ESENVIDDSG SASQGHLDAD MVGPSLSMDQ 480 LFSIIDFSPN WAYEDSEIKV LITGKFLKGQ SEVEKLKWSC MFGEIEVPAE VIADGVLRCL 540 APYHKYGRVP FYVTCSNRFA CSEVREFEFR AHPVQGSVDA DASKEQEIIF HMRLLKLLSL 600 GLDPPDYDSK VPGDNSSLSA KISDLMNEDE DEWDQMLKTP SAENFPSERM KDQLIQKLLK 660 EKLHVWLLHK ASEGGKGANV LDEDGQGVLH LAAALGYGWA IPPTILAGVN INFRDVNGWT 720 ALHWAAFCGR ERTVASLISL GAAAGALTDP TPKYPSGRTA ADLASMNRHK GIAGYLAENA 780 LAAHLISLDL KDPVASDAVD VSGVKAVQAV AERDANPITD SHIPYISLKD SLTAVCNATQ 840 AAARITQVFR AQSFQRKQVQ EYEDNERSSE AALSHIALKQ QNAFHGGPVD AATRIQKNYR 900 SYKGRKEYLI IRQKIVKLQA HVRGHQVRKN YRKFIWSVGI LEKVILRWRR KGSGLRGFKP 960 EGQIEAATSN ASSSKEDDYD FFKEGRKQTE ERLQKALARV KSMVQYPESR AQYQRLLNVV 1020 SEIEETKGAY DRALNAGADE MADFDDDLID LEALLDADEM DSLMMAES* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2cxk_A | 1e-13 | 484 | 576 | 9 | 95 | calmodulin binding transcription activator 1 |
2cxk_B | 1e-13 | 484 | 576 | 9 | 95 | calmodulin binding transcription activator 1 |
2cxk_C | 1e-13 | 484 | 576 | 9 | 95 | calmodulin binding transcription activator 1 |
2cxk_D | 1e-13 | 484 | 576 | 9 | 95 | calmodulin binding transcription activator 1 |
2cxk_E | 1e-13 | 484 | 576 | 9 | 95 | calmodulin binding transcription activator 1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription activator that binds to the DNA consensus sequence 5'-[ACG]CGCG[GTC]-3'. Binds calmodulin in a calcium-dependent manner in vitro (PubMed:12218065). Regulates transcriptional activity in response to calcium signals (Probable). Involved in freezing tolerance in association with CAMTA1 and CAMTA2 (PubMed:23581962). Required for the cold-induced expression of DREB1B/CBF1, DREB1C/CBF2, ZAT12 and GOLS3 (PubMed:19270186). Involved in response to cold. Contributes together with CAMTA5 to the positive regulation of the cold-induced expression of DREB1A/CBF3, DREB1B/CBF1 and DREB1C/CBF2 (PubMed:28351986). Involved together with CAMTA2 and CAMTA4 in the positive regulation of a general stress response (GSR) (PubMed:25039701). Involved in the regulation of GSR amplitude downstream of MEKK1 (PubMed:25157030). Involved in the regulation of a set of genes involved in defense responses against pathogens (PubMed:18298954). Involved in the regulation of both basal resistance and systemic acquired resistance (SAR) (PubMed:21900483). Acts as negative regulator of plant immunity (PubMed:19122675, PubMed:21900483, PubMed:22345509, PubMed:28407487). Binds to the promoter of the defense-related gene EDS1 and represses its expression (PubMed:19122675). Binds to the promoter of the defense-related gene NDR1 and represses its expression (PubMed:22345509). Involved in defense against insects (PubMed:23072934, PubMed:22371088). Required for tolerance to the generalist herbivore Trichoplusia ni, and contributes to the positive regulation of genes associated with glucosinolate metabolism (PubMed:23072934). Required for tolerance to Bradysia impatiens larvae. Mediates herbivore-induced wound response (PubMed:22371088). Required for wound-induced jasmonate accumulation (PubMed:23072934, PubMed:22371088). Involved in the regulation of ethylene-induced senescence by binding to the promoter of the senescence-inducer gene EIN3 and repressing its expression (PubMed:22345509). {ECO:0000269|PubMed:12218065, ECO:0000269|PubMed:18298954, ECO:0000269|PubMed:19122675, ECO:0000269|PubMed:19270186, ECO:0000269|PubMed:21900483, ECO:0000269|PubMed:22345509, ECO:0000269|PubMed:22371088, ECO:0000269|PubMed:23072934, ECO:0000269|PubMed:23581962, ECO:0000269|PubMed:25039701, ECO:0000269|PubMed:25157030, ECO:0000269|PubMed:28351986, ECO:0000269|PubMed:28407487, ECO:0000305|PubMed:11925432}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00042 | PBM | Transfer from AT2G22300 | Download |
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Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By heat shock, UVB, salt, wounding, ethylene and methyl jasmonate (PubMed:11162426, PubMed:12218065). Induced by infection with the fungal pathogen Golovinomyces cichoracearum (powdery mildew) and the bacterial pathogen Pseudomonas syringae pv tomato strain DC3000 (PubMed:22345509). {ECO:0000269|PubMed:11162426, ECO:0000269|PubMed:12218065, ECO:0000269|PubMed:22345509}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010645223.1 | 0.0 | PREDICTED: calmodulin-binding transcription activator 3 isoform X3 | ||||
Swissprot | Q8GSA7 | 0.0 | CMTA3_ARATH; Calmodulin-binding transcription activator 3 | ||||
TrEMBL | A0A2R6RDE6 | 0.0 | A0A2R6RDE6_ACTCH; Calmodulin-binding transcription activator 3 like | ||||
STRING | VIT_07s0141g00250.t01 | 0.0 | (Vitis vinifera) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G22300.2 | 0.0 | signal responsive 1 |
Link Out ? help Back to Top | |
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Phytozome | Kaladp0053s0486.3.p |