PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe

Family

MYB

Protein Properties

Length: 313aa MW: 34764.4 Da PI: 7.8787

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Kaladp0053s0429.2.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	23.6	1.2e-07	53	97	2	44
SSS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHH CS Myb_DNA-binding 2 grWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrw 44 +W+ eE + + +a + + ++ +W ++a++++ g+t +++ + Kaladp0053s0429.2.p 53 SKWSHEENKMFENALAVYDKDspdRWQKVAAMIP-GKTVGDVVKQY 97 58******************************.*99998776 PP
2	Myb_DNA-binding	44.6	3.3e-14	169	213	3	47
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 +WT+eE++l++ + k++G+g+W+ I+r + +Rt+ q+ s+ qky Kaladp0053s0429.2.p 169 PWTEEEHKLFLLGLKKYGKGDWRNISRNFVITRTPTQVASHAQKY 213 8***************************99**********9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51293	9.081	50	105	IPR017884	SANT domain
SMART	SM00717	1.2E-7	51	103	IPR001005	SANT/Myb domain
Pfam	PF00249	4.0E-6	53	97	IPR001005	SANT/Myb domain
SuperFamily	SSF46689	9.66E-11	53	107	IPR009057	Homeodomain-like
CDD	cd00167	8.44E-7	54	100	No hit	No description
PROSITE profile	PS51294	20.486	162	218	IPR017930	Myb domain
SuperFamily	SSF46689	8.22E-17	163	217	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	1.5E-17	165	217	IPR006447	Myb domain, plants
SMART	SM00717	5.3E-13	166	216	IPR001005	SANT/Myb domain
Gene3D	G3DSA:1.10.10.60	3.5E-12	166	213	IPR009057	Homeodomain-like
Pfam	PF00249	1.1E-12	169	213	IPR001005	SANT/Myb domain
CDD	cd00167	1.92E-11	169	214	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 313 aa Download sequence Send to blast
MKFEMEAEME IRSSGSNPNL NSYGYPEDHH QQQQNQTQRR QHRKQYHQVE SSSKWSHEEN 60 KMFENALAVY DKDSPDRWQK VAAMIPGKTV GDVVKQYEEL EADVSSIEAG LVPVPGYTCP 120 AFTLDWAGGS GGGWSQSGEG FSHGYGGVNG GKRLASVRGL EQERKKGVPW TEEEHKLFLL 180 GLKKYGKGDW RNISRNFVIT RTPTQVASHA QKYFIRQLSG GKDKRRASIH DITTVNLNES 240 QTLSPDQLAR GQHSPDMPFQ WGNQASTGSG GSMDFNGAYG FNSGRSGMLD SYMGSQSLGA 300 FQMQSAMHYP QV*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
2cjj_A	3e-16	51	117	7	73	RADIALIS
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Involved in the dorsovental asymmetry of flowers. Promotes ventral identity. {ECO:0000269\|PubMed:11937495, ECO:0000269\|PubMed:9118809}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_021278855.1	1e-114	transcription factor DIVARICATA
Swissprot	Q8S9H7	1e-108	DIV_ANTMA; Transcription factor DIVARICATA
TrEMBL	A0A061GWE3	1e-111	A0A061GWE3_THECC; DIV1A protein
STRING	EOY33801	1e-112	(Theobroma cacao)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G38090.1	2e-82	MYB family protein

Link Out ? help Back to Top
Phytozome	Kaladp0053s0429.2.p

Publications ? help Back to Top
Galego L,Almeida J Role of DIVARICATA in the control of dorsoventral asymmetry in Antirrhinum flowers. Genes Dev., 2002. 16(7): p. 880-91 [PMID:11937495] Almeida J,Rocheta M,Galego L Genetic control of flower shape in Antirrhinum majus. Development, 1997. 124(7): p. 1387-92 [PMID:9118809]