PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kaladp0053s0314.1.p
Organism
Kalanchoe laxiflora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family MYB
Protein Properties Length: 334aa    MW: 37689.6 Da    PI: 5.0181
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kaladp0053s0314.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding50.45.2e-161461148
                         TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
      Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                         +grWT eEd +l ++v+  G g+W+++++  g++R++k+c++rw +yl
  Kaladp0053s0314.1.p 14 KGRWTDEEDGILTRYVQANGEGSWRSVPKNAGLHRCGKSCRLRWINYL 61
                         79********************************************97 PP
2Myb_DNA-binding48.32.2e-1567112148
                          TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
      Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                          rg+ ++eE+  ++++++ +G++ W++Ia +++ gRt++++k++w+++l
  Kaladp0053s0314.1.p  67 RGNISPEEEAVIIRLHASMGNR-WSLIAGHLP-GRTDNEIKNYWNSHL 112
                          7899******************.*********.************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.601.9E-23564IPR009057Homeodomain-like
PROSITE profilePS5129417.75961IPR017930Myb domain
SuperFamilySSF466893.19E-2911108IPR009057Homeodomain-like
SMARTSM007172.8E-121363IPR001005SANT/Myb domain
PfamPF002494.8E-141461IPR001005SANT/Myb domain
CDDcd001671.07E-71661No hitNo description
PROSITE profilePS5129426.41462116IPR017930Myb domain
Gene3DG3DSA:1.10.10.601.1E-2665116IPR009057Homeodomain-like
SMARTSM007172.3E-1566114IPR001005SANT/Myb domain
PfamPF002491.0E-1367112IPR001005SANT/Myb domain
CDDcd001673.82E-1071112No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 334 aa     Download sequence    Send to blast
MVRAPCCEKE GLKKGRWTDE EDGILTRYVQ ANGEGSWRSV PKNAGLHRCG KSCRLRWINY  60
LRPDLKRGNI SPEEEAVIIR LHASMGNRWS LIAGHLPGRT DNEIKNYWNS HLSRKLLTFS  120
TPTKSKRTEP DGPTEVTAEW KPRKGRSRQR ASQRNSTALL KHSSLLKSTV ENGELEPIAK  180
EKTVEPNANE ESFEITEYIN EEGEDNTSSL NAEESLIFSS VHEQSYFNDE QSEIFSSFDD  240
ALNIKVDETD NDVSMHNLIA SSVDQKNGIK GSQEVDTVAA NWNEKKSLSL SSADDAWADW  300
DWKGLINGQK LIDEDEMLTM LWDDGSNFKS SNH*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h8a_C1e-231211625128MYB TRANSFORMING PROTEIN
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G47460.13e-69myb domain protein 12