PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kaladp0050s0302.1.p
Organism
Kalanchoe laxiflora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family CO-like
Protein Properties Length: 397aa    MW: 43987.4 Da    PI: 7.3208
Description CO-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kaladp0050s0302.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box29.91.1e-091457340
             zf-B_box  3 erkCpeHeekelqlfCedCqqllCedClleeHkg......Htvv 40
                         +r C+ + +k+++++C  ++ +lC++C ++ H+       H++v
  Kaladp0050s0302.1.p 14 ARACDSCVKKRARWYCAADDAFLCQSCDSSVHSAnslarrHERV 57
                         578*****************************657788888876 PP
2CCT68.41.9e-23341384144
                  CCT   1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkqa 44 
                          Rea+++RYkeKr+tR+F+KkirYe+RK +Ae+RpR+KGrFvk++
  Kaladp0050s0302.1.p 341 REARVSRYKEKRRTRLFSKKIRYEVRKLNAEKRPRMKGRFVKRS 384
                          9*****************************************86 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003361.3E-101259IPR000315B-box-type zinc finger
PROSITE profilePS5011911.1631259IPR000315B-box-type zinc finger
PfamPF006435.7E-81457IPR000315B-box-type zinc finger
CDDcd000212.46E-101559No hitNo description
PfamPF062033.4E-18341383IPR010402CCT domain
PROSITE profilePS5101715.934341383IPR010402CCT domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005622Cellular Componentintracellular
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 397 aa     Download sequence    Send to blast
MMKKMASAVG GKTARACDSC VKKRARWYCA ADDAFLCQSC DSSVHSANSL ARRHERVRLK  60
TASSFKLSAS DDFMASKSVP SWQRDVTRKP RTPRGKQSTP KSEYGSNPNP FSLVPELGVD  120
ETASVCESEE QLVYSRVPVY EPFVAELCTS ANSNEEGKFD RSLQSDEGNN SSVSDPPKTY  180
DVENFNGFLP SEMDLEEFAA DVESLLGKGL ENEPCGMEGL GLVEIVKEER STERDALELV  240
SFDYGCSANR FEDEAEDEDG ERKQTMKMVT TTTKLLRLDY EGVITAWAGQ RCPWAGGSRP  300
NMDPAHFWPS CMGGCGIEGH HPDAGRVPGM GHGGTLGDAE REARVSRYKE KRRTRLFSKK  360
IRYEVRKLNA EKRPRMKGRF VKRSALGVAP NTSLIR*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1351367RRTRLFSKKIRYEVRKL
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002282578.11e-135PREDICTED: zinc finger protein CONSTANS-LIKE 16
TrEMBLD7T9491e-134D7T949_VITVI; Uncharacterized protein
STRINGVIT_01s0011g03520.t011e-134(Vitis vinifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68520.14e-99B-box type zinc finger protein with CCT domain