PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kaladp0050s0279.1.p
Organism
Kalanchoe laxiflora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family TCP
Protein Properties Length: 333aa    MW: 37720.1 Da    PI: 9.2464
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kaladp0050s0279.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP141.75.5e-441272633133
                  TCP   3 gkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec.......eaesssssasns 85 
                          gk drhski+T++g RdRR+Rls+++a++fFdLqd LGfdk+sktieWL++++k aike +g++  s  ++       ++++ +      
  Kaladp0050s0279.1.p 127 GKNDRHSKICTAQGFRDRRMRLSVQIARKFFDLQDALGFDKASKTIEWLFNKSKNAIKEVMGSTYHSR-AMdgpqrsnNDKDGR------ 209
                          799************************************************************55554.332211111222222...... PP

                  TCP  86 ssg........kaaksaakskksqksaasalnlakesrakarararertrekmrik 133
                            +         +++s++ + +++++ ++  + +k+ r karararert ekmr++
  Kaladp0050s0279.1.p 210 --NklksvnkqCKSTSKKLKGNNNNQISQCPQHKKDVRDKARARARERTLEKMRLR 263
                          ..123345533334444444444444455677777999***************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF036347.4E-40127261IPR005333Transcription factor, TCP
PROSITE profilePS5136934.14128186IPR017887Transcription factor TCP subgroup
PROSITE profilePS5137010.065242259IPR017888CYC/TB1, R domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:2000032Biological Processregulation of secondary shoot formation
GO:0005634Cellular Componentnucleus
Sequence ? help Back to Top
Protein Sequence    Length: 333 aa     Download sequence    Send to blast
MMFSSSNSNG DSDCFRPYNG SMSPSSFPLA SSSSPALLEE DQFFVDHLLF MSQGQQQFFL  60
GHESEPHQLA LVDHQDFVDG MTVAGEFEEE VTPAQESKKK NRVGSSNDKN KNDCRPAKRP  120
NKRIRIGKND RHSKICTAQG FRDRRMRLSV QIARKFFDLQ DALGFDKASK TIEWLFNKSK  180
NAIKEVMGST YHSRAMDGPQ RSNNDKDGRN KLKSVNKQCK STSKKLKGNN NNQISQCPQH  240
KKDVRDKARA RARERTLEKM RLRVIEDPNQ RPFAAAANPH KLTCSEHIGS CSPFEQVDEI  300
SGAQSQSVEE LIHADWDIDS ARFYTSYIFD TN*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68800.12e-28TCP domain protein 12