PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Protein Features |

Gene Ontology |

Function |

Regulation |

Publication

Basic Information? help Back to Top

TF ID

Kaladp0050s0250.8.p

Organism

Kalanchoe laxiflora

Taxonomic ID

1670617

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe

Family

bZIP

Protein Properties

Length: 244aa MW: 27363.7 Da PI: 8.9212

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Kaladp0050s0250.8.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	38.4	2.6e-12	75	107	2	34
XXXCHHHCHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 2 kelkrerrkqkNReAArrsRqRKkaeieeLeek 34 +++k++rr+++NReAAr+sR+RKka++++Le+ Kaladp0050s0250.8.p 75 PADKVQRRLAQNREAARKSRLRKKAYVQQLETS 107 689***************************974 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.20.5.170	6.7E-9	73	123	No hit	No description
SMART	SM00338	7.6E-9	74	145	IPR004827	Basic-leucine zipper domain
PROSITE profile	PS50217	8.875	76	120	IPR004827	Basic-leucine zipper domain
Pfam	PF00170	6.3E-9	76	107	IPR004827	Basic-leucine zipper domain
SuperFamily	SSF57959	3.05E-7	78	123	No hit	No description
PROSITE pattern	PS00036	0	81	96	IPR004827	Basic-leucine zipper domain
Pfam	PF14144	2.8E-30	166	236	IPR025422	Transcription factor TGA like domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 244 aa Download sequence Send to blast
MQSPASHFLP MTGMGMYDPV NHIGTWAENF KGNGFTITSP STILEVNTKL DNQSEDTSNG 60 TFGHATNYDE ETTKPADKVQ RRLAQNREAA RKSRLRKKAY VQQLETSRLR LLQLEQELHQ 120 TRQQGFNAGG GLGASHSGFS GAVNSGITTF QMEYGRWVEK NNKQVIELRN ALNSYQSDAD 180 LETLVDNVMK HYFELFQMKQ TAAKADVFYL MSGMWKTTAE RFFLWIGGFR PSELLKTGSC 240 APT*

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional activator that binds specifically to the DNA sequence 5'-TGACG-3'. Recognizes ocs elements like the as-1 motif of the cauliflower mosaic virus 35S promoter. Binding to the as-1-like cis elements mediate auxin- and salicylic acid-inducible transcription. May be involved in the induction of the systemic acquired resistance (SAR) via its interaction with NPR1. Could also bind to the Hex-motif (5'-TGACGTGG-3') another cis-acting element found in plant histone promoters.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010652849.1	1e-114	PREDICTED: transcription factor TGA1 isoform X3
Refseq	XP_021892772.1	1e-114	transcription factor TGA1-like isoform X2
Swissprot	Q39162	1e-100	TGA4_ARATH; Transcription factor TGA4
TrEMBL	A0A061DID0	1e-112	A0A061DID0_THECC; BZIP transcription factor family protein isoform 2 (Fragment)
TrEMBL	A0A061DJU4	1e-113	A0A061DJU4_THECC; BZIP transcription factor family protein isoform 3 (Fragment)
STRING	evm.model.supercontig_100.3	1e-113	(Carica papaya)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G10030.2	2e-86	TGACG motif-binding factor 4

Link Out ? help Back to Top
Phytozome	Kaladp0050s0250.8.p

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Canales J,Contreras-López O,Álvarez JM,Gutiérrez RA Nitrate induction of root hair density is mediated by TGA1/TGA4 and CPC transcription factors in Arabidopsis thaliana. Plant J., 2017. 92(2): p. 305-316 [PMID:28771873]