PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kaladp0050s0232.1.p
Organism
Kalanchoe laxiflora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family NAC
Protein Properties Length: 366aa    MW: 42119.7 Da    PI: 6.5684
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kaladp0050s0232.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM172.61.2e-5381371129
                  NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk..kvkaeek.ewyfFskrdkkyatgkrknratksgyWkatg 87 
                          +ppGfrFhPtdeelv++yL+k++++k+++l +vik+vd+y++ePwdL++  k+ +e++ ++yfFs++dkky+tg+r+nratk+g+Wkatg
  Kaladp0050s0232.1.p   8 VPPGFRFHPTDEELVDYYLRKRIASKQIDL-DVIKDVDLYRIEPWDLQElcKIGTEDQsDYYFFSHKDKKYPTGTRTNRATKAGFWKATG 96 
                          69****************************.9***************95455555555488***************************** PP

                  NAM  88 kdkevlskkgelvglkktLvfykgrapkgektdWvmheyrle 129
                          +dk++++ k+ lvg++ktLvfykgrap+g+k dW+mheyrle
  Kaladp0050s0232.1.p  97 RDKAIYV-KHGLVGMRKTLVFYKGRAPNGQKLDWIMHEYRLE 137
                          *******.8889****************************85 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019415.62E-595157IPR003441NAC domain
PROSITE profilePS5100557.738157IPR003441NAC domain
PfamPF023653.2E-279136IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0048759Biological Processxylem vessel member cell differentiation
GO:1901348Biological Processpositive regulation of secondary cell wall biogenesis
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 366 aa     Download sequence    Send to blast
MNSFSHVVPP GFRFHPTDEE LVDYYLRKRI ASKQIDLDVI KDVDLYRIEP WDLQELCKIG  60
TEDQSDYYFF SHKDKKYPTG TRTNRATKAG FWKATGRDKA IYVKHGLVGM RKTLVFYKGR  120
APNGQKLDWI MHEYRLETNE NAAPQEEGWV VCRVFRKRMV TTNMSKARDH QHESPYWYEE  180
QASFMADMDS PMRMLSSHPY PPPNHPYHSS SYSGKQEQQL GLHNYIISQE TSFLDLPQLE  240
SPEFPIPAST NNASYSFRDQ VVQHGYQLNV MYGNNINNSF TSNEHHQAVD RVSTDWRVLD  300
KFVASQLSHE NAGEKNNYLN NNGAGYDMDQ DEMSGLIDSN GSKRVKMGTE FASSSTSSGQ  360
ADQWT*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A4e-46815815169Stress-induced transcription factor NAC1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator that binds to the secondary wall NAC binding element (SNBE), 5'-(T/A)NN(C/T)(T/C/G)TNNNNNNNA(A/C)GN(A/C/T)(A/T)-3', in the promoter of target genes (By similarity). Involved in xylem formation by promoting the expression of secondary wall-associated transcription factors and of genes involved in secondary wall biosynthesis and programmed cell death, genes driven by the secondary wall NAC binding element (SNBE). Triggers thickening of secondary walls (PubMed:16103214, PubMed:25148240). {ECO:0000250|UniProtKB:Q9LVA1, ECO:0000269|PubMed:16103214, ECO:0000269|PubMed:25148240}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00136DAPTransfer from AT1G12260Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010259028.11e-147PREDICTED: NAC domain-containing protein 7
SwissprotQ9FWX21e-130NAC7_ARATH; NAC domain-containing protein 7
TrEMBLA0A1U7ZYT71e-146A0A1U7ZYT7_NELNU; NAC domain-containing protein 7
STRINGXP_010259028.11e-147(Nelumbo nucifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G12260.11e-129NAC 007
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Heyndrickx KS,Vandepoele K
    Systematic identification of functional plant modules through the integration of complementary data sources.
    Plant Physiol., 2012. 159(3): p. 884-901
    [PMID:22589469]