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Plant Transcription
Factor Database
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Transcription Factor Information
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Basic
Information? help
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| TF ID |
Kaladp0050s0141.1.p |
| Organism |
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| Taxonomic ID |
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| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
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| Family |
YABBY |
| Protein Properties |
Length: 255aa MW: 28498.5 Da PI: 8.8025 |
| Description |
YABBY family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Kaladp0050s0141.1.p | genome | JGI | View CDS |
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| Signature Domain? help Back to Top |
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| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | YABBY | 184.2 | 7.1e-57 | 6 | 165 | 2 | 160 |
YABBY 2 dvfssseqvCyvqCnfCntilavsvPstslfkvvtvrCGhCtsllsvnlakas....qllaaeshldeslkeelleelkveeenlksnve 87
++f+ +q+CyvqC+fC til+vsvP +sl+++vtv+CGhC sllsvn++kas + la+ ++++ +++ +++++ ++ + n +
Kaladp0050s0141.1.p 6 NIFDLQDQICYVQCGFCATILLVSVPCSSLSNTVTVKCGHCNSLLSVNMMKASfvplNFLASLTQIEQLVQQ----KEESSADESRANAT 91
578999********************************************9995554455666654443333....33333333333333 PP
YABBY 88 keesastsvssekl.senedeevprvppvirPPekrqrvPsaynrfikeeiqrikasnPdishreafsaaaknW 160
k++ ++ s s+ +++++++++ +++PPekrqr+Psayn fikeei+r+k ++P +sh+eafs+aakn
Kaladp0050s0141.1.p 92 KTTDQKLSPSTGPSsDTEDEDDTSINNAINKPPEKRQRAPSAYNHFIKEEIKRLKKEDPTMSHKEAFSTAAKNV 165
33333333333333033444444445679********************************************6 PP
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| Sequence ? help Back to Top |
| Protein Sequence Length: 255 aa
Download sequence Send
to blast |
MSAFSNIFDL QDQICYVQCG FCATILLVSV PCSSLSNTVT VKCGHCNSLL SVNMMKASFV 60
PLNFLASLTQ IEQLVQQKEE SSADESRANA TKTTDQKLSP STGPSSDTED EDDTSINNAI 120
NKPPEKRQRA PSAYNHFIKE EIKRLKKEDP TMSHKEAFST AAKNVRFYKL EAQFSKVLLV 180
TQNQLKPSVT FFSGQTSLIC GTRGVKRAMI RQKGTCDGSK GLVSVEELDD ITSRRWLFKI 240
RFRFYVFQQF RICG*
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| Functional Description ? help
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| Source |
Description |
| UniProt | Essential for the formation and the abaxial-adaxial asymmetric growth of the ovule outer integument. {ECO:0000269|PubMed:10601041, ECO:0000269|PubMed:12183380, ECO:0000269|PubMed:9093862, ECO:0000269|PubMed:9118807}. |
| Regulation -- Description ? help
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| Source |
Description |
| UniProt | INDUCTION: Autoinduction down-regulated by SUP in adaxial region of the ovule outer integument. Negatively and spatially regulated by HLL, ANT, BELL1, NZZ/SPL and SUP. {ECO:0000269|PubMed:10601041, ECO:0000269|PubMed:12183380, ECO:0000269|PubMed:12183381}. |
| Publications
? help Back to Top |
- Lora J,Hormaza JI,Herrero M
Transition from two to one integument in Prunus species: expression pattern of INNER NO OUTER (INO), ABERRANT TESTA SHAPE (ATS) and ETTIN (ETT).
New Phytol., 2015. 208(2): p. 584-95
[PMID:25991552] - Skinner DJ,Brown RH,Kuzoff RK,Gasser CS
Conservation of the role of INNER NO OUTER in development of unitegmic ovules of the Solanaceae despite a divergence in protein function.
BMC Plant Biol., 2016. 16(1): p. 143
[PMID:27350128] - Simon MK,Skinner DJ,Gallagher TL,Gasser CS
Integument Development in Arabidopsis Depends on Interaction of YABBY Protein INNER NO OUTER with Coactivators and Corepressors.
Genetics, 2017. 207(4): p. 1489-1500
[PMID:28971961]
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