PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kaladp0050s0003.1.p
Organism
Kalanchoe laxiflora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family CPP
Protein Properties Length: 595aa    MW: 63847.5 Da    PI: 8.7269
Description CPP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kaladp0050s0003.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCR45.21.9e-14105144242
                  TCR   2 ekkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNkeek 42 
                          ++k+CnCk+skClk+YCeCfa+g++C++ C+C +C+N+ e+
  Kaladp0050s0003.1.p 105 RQKQCNCKHSKCLKLYCECFASGTYCEN-CNCVNCHNNMEH 144
                          689************************9.********9875 PP
2TCR512.8e-16189228140
                  TCR   1 kekkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNke 40 
                          k++kgC+Ckks ClkkYCeCf+a+  Cse+CkC dCkN e
  Kaladp0050s0003.1.p 189 KHNKGCHCKKSGCLKKYCECFQANILCSENCKCIDCKNFE 228
                          589***********************************65 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM011141.8E-17104144IPR033467Tesmin/TSO1-like CXC domain
PROSITE profilePS5163436.413105229IPR005172CRC domain
PfamPF036384.9E-11106141IPR005172CRC domain
SMARTSM011143.5E-20189230IPR033467Tesmin/TSO1-like CXC domain
PfamPF036386.2E-13192227IPR005172CRC domain
Sequence ? help Back to Top
Protein Sequence    Length: 595 aa     Download sequence    Send to blast
MMEGKDLVPK SGIPSAPMPL DVPPKKLARQ LDFNVVSSGH ATGVPIQPSG TPAAPPPRHV  60
VASMTVAPPP PPPSPLLPTV TPQPTMPPVK PESPKSKTKD GTPKRQKQCN CKHSKCLKLY  120
CECFASGTYC ENCNCVNCHN NMEHEASRRE AVEATLERNP NAFRPKIAGS PQVNRAAKEA  180
TGDLLLLAKH NKGCHCKKSG CLKKYCECFQ ANILCSENCK CIDCKNFEGS EERKAIHGDQ  240
ATNMAYIQQA ANAAITGAVG LSGFISPPLT KRRKGPDIFF GSSSNDLSKI EHIERANTGK  300
SPAPSNSSLT SVACPVKLTP PSHSKFTYSS LLADIIQPHD LKELCSNMVV MSREVAKTYS  360
AQENAPAHKA TERRIVIPTP NQNIPRTHNE AAAENPTTSD NSGAISLNND KPDCSRPDSV  420
DMLDRPLSPG TLALMCDEHD ELFVANATPN RLTGQSGHLG LQLPNGYEMT EVYAEQEKVV  480
LSKLRDTLNR LIYFGEIKER KFSALARSEA GQKDAFRNSS ISGRHGTVNQ PIPMQTSNSK  540
NTAPAAATHV GTGAASSTTG TAASLVFSNS ISPHIKISSI GRTGNMKPKI EQHS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5fd3_A4e-3110623611130Protein lin-54 homolog
5fd3_B4e-3110623611130Protein lin-54 homolog
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtPlays a role in development of both male and female reproductive tissues. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024952904.10.0protein tesmin/TSO1-like CXC 5 isoform X1
SwissprotQ9SZD11e-150TCX5_ARATH; Protein tesmin/TSO1-like CXC 5
TrEMBLA0A067DUG90.0A0A067DUG9_CITSI; Uncharacterized protein
STRINGXP_006475649.10.0(Citrus sinensis)
STRINGXP_006451190.10.0(Citrus clementina)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G29000.11e-137Tesmin/TSO1-like CXC domain-containing protein