PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kaladp0048s0933.2.p
Organism
Kalanchoe laxiflora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family MYB_related
Protein Properties Length: 337aa    MW: 36311.6 Da    PI: 7.3249
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kaladp0048s0933.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding39.71.1e-1289133347
                          SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
      Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                          +WT+eE+ l++ + ++lG+g+W+ I+rt    Rt+ q+ s+ qky
  Kaladp0048s0933.2.p  89 PWTEEEHRLFLLGLQKLGKGDWRGISRTYVISRTPTQVASHAQKY 133
                          7*****************************99************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.60.106.1E-4321IPR001878Zinc finger, CCHC-type
PROSITE profilePS5129418.44382138IPR017930Myb domain
SuperFamilySSF466896.95E-1784139IPR009057Homeodomain-like
TIGRFAMsTIGR015572.8E-1885137IPR006447Myb domain, plants
SMARTSM007172.2E-886136IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.605.5E-1087132IPR009057Homeodomain-like
CDDcd001673.55E-989134No hitNo description
PfamPF002494.7E-1089133IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 337 aa     Download sequence    Send to blast
MTRRCSHCSH NGHNSRTCPN RGVKIFGVRL TDGLIRKSAS MGNLTHCAGS NLNGSALAGS  60
PGDAPDHGDG YASEDLAASG SREKKKGIPW TEEEHRLFLL GLQKLGKGDW RGISRTYVIS  120
RTPTQVASHA QKYFIRQSNV SRRKRRSSLF DIVADESVEM PMETLEENPQ NHAESQSSYQ  180
LPPVPAPHIP TFPAPEEENE SMDSATNSND GDFSLPMPES APTYYPVPVI VPAYVSPFFP  240
FSVPYWPDNR SAEMSEATKP HVVLKPTAVQ PKSPINVDEL LGMSKLSLGV ESKSEAGPSA  300
SPSLSLKLSE GSSRQSAFQA NPAPGTSASS NPIRAL*
Functional Description ? help Back to Top
Source Description
UniProtTranscription repressor that binds to 5'-TATCCA-3' elements in gene promoters. Contributes to the sugar-repressed transcription of promoters containing SRS or 5'-TATCCA-3' elements. Transcription repressor involved in a cold stress response pathway that confers cold tolerance. Suppresses the DREB1-dependent signaling pathway under prolonged cold stress. DREB1 responds quickly and transiently while MYBS3 responds slowly to cold stress. They may act sequentially and complementarily for adaptation to short- and long-term cold stress (PubMed:20130099). {ECO:0000269|PubMed:12172034, ECO:0000269|PubMed:20130099}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Repressed by sucrose and gibberellic acid (GA) (PubMed:12172034). Induced by cold stress in roots and shoots. Induced by salt stress in shoots. Down-regulated by abscisic aci (ABA) in shoots (PubMed:20130099). {ECO:0000269|PubMed:12172034, ECO:0000269|PubMed:20130099}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009626132.11e-144PREDICTED: transcription factor MYB1R1 isoform X2
SwissprotQ7XC571e-120MYBS3_ORYSJ; Transcription factor MYBS3
TrEMBLA0A1Q3CCQ31e-143A0A1Q3CCQ3_CEPFO; Myb_DNA-binding domain-containing protein
STRINGXP_006477144.11e-142(Citrus sinensis)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G47390.16e-97MYB_related family protein
Publications ? help Back to Top
  1. Rice Chromosome 10 Sequencing Consortium
    In-depth view of structure, activity, and evolution of rice chromosome 10.
    Science, 2003. 300(5625): p. 1566-9
    [PMID:12791992]
  2. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  3. Su CF, et al.
    A novel MYBS3-dependent pathway confers cold tolerance in rice.
    Plant Physiol., 2010. 153(1): p. 145-58
    [PMID:20130099]