PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kaladp0048s0903.1.p
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family bHLH
Protein Properties Length: 230aa    MW: 25210.6 Da    PI: 8.919
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kaladp0048s0903.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH29.31.6e-09158205455
                          HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                  HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                          +h+ +Er RR++i +++  L++l+P +    +k   Ka +L + ++Y++sLq
  Kaladp0048s0903.1.p 158 SHSLAERARREKISKRMKILQDLVPGC----NKLIGKALVLDEIINYVQSLQ 205
                          8*************************9....666*****************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000832.10E-8152209No hitNo description
SuperFamilySSF474593.93E-15152212IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088815.091154204IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.107.1E-15154209IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000105.8E-7158205IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.5E-9160210IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 230 aa     Download sequence    Send to blast
MELPLVNESS FTPANPASYS LEDFWPLGAG IGDHTRVLGL RLANSERRIG LGNRDGSAEE  60
STVTDQLISR NGGGGRKRRL ADESSKVADA SGAEQLKTSS TKRVKILEPK EEKRSMKDEV  120
DGASVTGAKH AEQNTNVSEP PKQDYIHVRA RRGQATDSHS LAERARREKI SKRMKILQDL  180
VPGCNKLIGK ALVLDEIINY VQSLQHQVEV TTVGLCVRVF YCLICLFLV*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015882712.12e-80transcription factor bHLH79 isoform X1
SwissprotQ9LV172e-55BH079_ARATH; Transcription factor bHLH79
TrEMBLA0A2I4FIZ41e-77A0A2I4FIZ4_JUGRE; transcription factor bHLH79-like isoform X1
STRINGXP_004154996.12e-78(Cucumis sativus)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G62610.17e-58bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]