PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe

Family

MYB

Protein Properties

Length: 311aa MW: 35083.5 Da PI: 7.3069

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Kaladp0048s0278.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	29	2.5e-09	28	72	3	45
SS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrwq 45 WT eE +l+ +a +++ ++ +W+++a++++ g++ +++ +q Kaladp0048s0278.1.p 28 VWTHEENKLFENALALYDKDtpdRWAKVAAMIP-GKSVVDVIKQYQ 72 5******************************.*****99998 PP
2	Myb_DNA-binding	43.3	8.7e-14	136	180	3	47
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 +W ++E+ l++ + k++G+g+W+ Iar + ++Rt+ q+ s+ qky Kaladp0048s0278.1.p 136 PWNEDEHRLFLMGLKKYGKGDWRNIARNFVTTRTPTQVASHAQKY 180 8*******************************************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51293	8.411	24	79	IPR017884	SANT domain
SMART	SM00717	2.4E-8	25	77	IPR001005	SANT/Myb domain
SuperFamily	SSF46689	1.17E-11	28	82	IPR009057	Homeodomain-like
Pfam	PF00249	3.0E-8	28	72	IPR001005	SANT/Myb domain
CDD	cd00167	2.23E-7	29	74	No hit	No description
Gene3D	G3DSA:1.10.10.60	8.3E-12	129	189	IPR009057	Homeodomain-like
PROSITE profile	PS51294	19.4	129	185	IPR017930	Myb domain
SuperFamily	SSF46689	2.14E-15	132	184	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	7.2E-17	132	184	IPR006447	Myb domain, plants
SMART	SM00717	1.9E-12	133	183	IPR001005	SANT/Myb domain
CDD	cd00167	4.55E-10	136	181	No hit	No description
Pfam	PF00249	3.3E-11	136	180	IPR001005	SANT/Myb domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 311 aa Download sequence Send to blast
MNWGVEVLSS SSHGGSSDWL FEISMNCVWT HEENKLFENA LALYDKDTPD RWAKVAAMIP 60 GKSVVDVIKQ YQALEEDIID IEAGLIPIPG YNSSSSFTME WMVNRDFEGM KQICGSEVKR 120 CSTNLGFNQE MKKGVPWNED EHRLFLMGLK KYGKGDWRNI ARNFVTTRTP TQVASHAQKY 180 FIRQLNRGKD KRRSSIHDTT IVNLMDHASP SADTNKDLLQ DQPSSVEKSP QPSDLVCLTQ 240 TFYSPKVANR ESLMVFNSST ENSFTTSTPR TAATYGHSLK EQTMHRSIFL GSQCGAQTMV 300 FHVPSVQHRQ *

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
2cjj_A	6e-17	29	94	11	76	RADIALIS
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Involved in the dorsovental asymmetry of flowers. Promotes ventral identity. {ECO:0000269\|PubMed:11937495, ECO:0000269\|PubMed:9118809}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_002278729.1	1e-118	PREDICTED: transcription factor DIVARICATA
Refseq	XP_010654186.1	1e-118	PREDICTED: transcription factor DIVARICATA
Swissprot	Q8S9H7	9e-96	DIV_ANTMA; Transcription factor DIVARICATA
TrEMBL	A0A438JAN2	1e-118	A0A438JAN2_VITVI; Transcription factor DIVARICATA
STRING	VIT_08s0007g01920.t01	1e-117	(Vitis vinifera)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G38090.1	5e-92	MYB family protein

Link Out ? help Back to Top
Phytozome	Kaladp0048s0278.1.p

Publications ? help Back to Top
Galego L,Almeida J Role of DIVARICATA in the control of dorsoventral asymmetry in Antirrhinum flowers. Genes Dev., 2002. 16(7): p. 880-91 [PMID:11937495] Almeida J,Rocheta M,Galego L Genetic control of flower shape in Antirrhinum majus. Development, 1997. 124(7): p. 1387-92 [PMID:9118809]