PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Kaladp0048s0257.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
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Family | MYB_related | ||||||||
Protein Properties | Length: 164aa MW: 18501.9 Da PI: 10.6715 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 26.8 | 1.2e-08 | 3 | 34 | 16 | 47 |
HHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 16 vkqlGggtWktIartmgkgRtlkqcksrwqky 47 k++G+g+W+ Iar + ++Rt+ q+ s+ qky Kaladp0048s0257.1.p 3 LKKYGKGDWRNIARNFVTTRTPTQVASHAQKY 34 79*****************************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 15.8 | 1 | 39 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 1.3E-6 | 2 | 43 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 1.96E-8 | 2 | 38 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 8.26E-6 | 2 | 35 | No hit | No description |
TIGRFAMs | TIGR01557 | 1.9E-9 | 2 | 38 | IPR006447 | Myb domain, plants |
Pfam | PF00249 | 4.3E-6 | 3 | 34 | IPR001005 | SANT/Myb domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 164 aa Download sequence Send to blast |
MGLKKYGKGD WRNIARNFVT TRTPTQVASH AQKYFIRQLN RGKDKRRSSI HDITIVNLKD 60 HASPSADTNK DLLQDQPSSV EKSRQPSDLV CLTQTFYSPK VANRESLMVF NSSTENSFMT 120 STPRTATYGH SLKEQTMHRS IFLGSQCGAQ TMVFHVPSVQ HRQ* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Involved in the dorsovental asymmetry of flowers. Promotes ventral identity. {ECO:0000269|PubMed:11937495, ECO:0000269|PubMed:9118809}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_002278729.1 | 9e-48 | PREDICTED: transcription factor DIVARICATA | ||||
Refseq | XP_010654186.1 | 9e-48 | PREDICTED: transcription factor DIVARICATA | ||||
Swissprot | Q8S9H7 | 2e-41 | DIV_ANTMA; Transcription factor DIVARICATA | ||||
TrEMBL | A0A438JAN2 | 7e-47 | A0A438JAN2_VITVI; Transcription factor DIVARICATA | ||||
STRING | VIT_08s0007g01920.t01 | 4e-47 | (Vitis vinifera) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G38090.1 | 1e-35 | MYB family protein |
Link Out ? help Back to Top | |
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Phytozome | Kaladp0048s0257.1.p |
Publications ? help Back to Top | |||
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