PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kaladp0048s0209.1.p
Organism
Kalanchoe laxiflora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family MYB
Protein Properties Length: 337aa    MW: 37471.9 Da    PI: 6.6262
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kaladp0048s0209.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding33.41e-10140948
                         HHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
      Myb_DNA-binding  9 dellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                         d++lvd ++  G g+W++ ++  g++R++k+c++rw +yl
  Kaladp0048s0209.1.p  1 DKKLVDHIETNGQGSWRALPKLAGLNRCGKSCRLRWTNYL 40
                         79************************************97 PP
2Myb_DNA-binding54.42.9e-174691148
                         TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
      Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                         rg++++eE++ +++++  lG++ W++I+++++ gRt++++k++w+++l
  Kaladp0048s0209.1.p 46 RGKFSEEEEQAIINLHSVLGNK-WSAISSHLP-GRTDNEIKNFWNTHL 91
                         89********************.*********.************996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd001671.11E-5140No hitNo description
SMARTSM007170.2142IPR001005SANT/Myb domain
SuperFamilySSF466891.63E-23187IPR009057Homeodomain-like
PROSITE profilePS5129411.043140IPR017930Myb domain
PfamPF002495.2E-9140IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.3E-17147IPR009057Homeodomain-like
PROSITE profilePS5129426.9084195IPR017930Myb domain
SMARTSM007174.5E-174593IPR001005SANT/Myb domain
PfamPF002494.6E-164691IPR001005SANT/Myb domain
CDDcd001677.27E-134891No hitNo description
Gene3DG3DSA:1.10.10.601.8E-274895IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 337 aa     Download sequence    Send to blast
DKKLVDHIET NGQGSWRALP KLAGLNRCGK SCRLRWTNYL RPDIKRGKFS EEEEQAIINL  60
HSVLGNKWSA ISSHLPGRTD NEIKNFWNTH LKKKLLQLGI DPITHRPRTD HLNLLANLPQ  120
LLAAANLTHL ISNSANPWDN AMRLQQHLSS DPRQHLAKVQ LMSNLLQALN SAANPPLNLD  180
IMMSSLFKKQ GSFQDQRVLE SLTRMNNSGQ MEASHEFGNG GQIGHFSAGF CNPMQLDDFT  240
TLESCEPFLN SNSSQFGGSY CAPFSDHSSE IPALVSATST ERGISTINET TNNSKYHPSA  300
EASNPTSMTS TTFEAWGDHQ MVDDEASESY WKDIIE*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A3e-2219515108B-MYB
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021656592.11e-106transcription factor MYB41-like
RefseqXP_022746687.11e-106transcription factor MYB41-like
TrEMBLA0A438GG891e-102A0A438GG89_VITVI; Transcription factor MYB39
TrEMBLF6HEE41e-102F6HEE4_VITVI; Uncharacterized protein
STRINGVIT_16s0039g01710.t011e-103(Vitis vinifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G16770.24e-77myb domain protein 9