PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Kaladp0048s0199.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
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Family | TCP | ||||||||
Protein Properties | Length: 396aa MW: 42815.1 Da PI: 7.619 | ||||||||
Description | TCP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | TCP | 132.9 | 3e-41 | 75 | 221 | 1 | 120 |
TCP 1 aagkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec.eaesssssasnsssg. 88 +a+k+++++++hTkv+gR+RR+R++a+caar+F+L++eLG+++d++tieWLlqqa+pa++++tgt++++a+++ + s +ss+s+ s++ Kaladp0048s0199.1.p 75 PAPKRTSTKDRHTKVDGRGRRIRMPALCAARVFQLTRELGHKSDGETIEWLLQQAEPAVIAATGTGTIPANFTsLNISLRSSGSSMSIPs 164 589*******************************************************************99988888888888777777 PP TCP 89 ..........................kaaksaa.kskksqksaasalnlakesrakara 120 ++++s++ +s++ ++ l + ++++++ r+ Kaladp0048s0199.1.p 165 qlrstyfnpsfsipqqrrtlfpglglSSSTSSTiLDFQSNHGNN--LGILQQTKQELRE 221 77777777777788888788888887444444423333333333..4444444444333 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03634 | 1.1E-41 | 80 | 242 | IPR005333 | Transcription factor, TCP |
PROSITE profile | PS51369 | 27.923 | 82 | 136 | IPR017887 | Transcription factor TCP subgroup |
Sequence ? help Back to Top |
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Protein Sequence Length: 396 aa Download sequence Send to blast |
MEGGGDDHHH THNSHHHIFQ RSNNFPFQLL EKKEDDQSAA CSSSGYPPSN SLAIVSSTTT 60 NNNPDPTQPD PTKKPAPKRT STKDRHTKVD GRGRRIRMPA LCAARVFQLT RELGHKSDGE 120 TIEWLLQQAE PAVIAATGTG TIPANFTSLN ISLRSSGSSM SIPSQLRSTY FNPSFSIPQQ 180 RRTLFPGLGL SSSTSSTILD FQSNHGNNLG ILQQTKQELR ETTSSTLDLS EDDSHLSRKR 240 RTPEQEMPPS SPPQHQLNNY LLQSTSSGVI PASHGQIPAN IWMLANPNNN QIENPIWTFP 300 PQVSSNNAAA AAAALYRGTM SSGLHFMNFP TPVALLGSGQ HLGPGQGSSG LGPGNNSMNE 360 NHLNIFGGLN PYRSVSGSDN RASGSQSHHE DERHD* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 236 | 241 | SRKRRT |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor involved the regulation of plant development. Together with TCP15, modulates plant stature by promoting cell division in young internodes. Represses cell proliferation in leaf and floral tissues (PubMed:21668538). Together with TCP15, acts downstream of gibberellin (GA), and the stratification pathways that promote seed germination. Involved in the control of cell proliferation at the root apical meristem (RAM) by regulating the activity of CYCB1-1 (PubMed:25655823). Involved in the regulation of seed germination. May regulate the activation of embryonic growth potential during seed germination (PubMed:17953649, PubMed:22155632). Acts together with SPY to promote cytokinin responses that affect leaf shape and trichome development in flowers (PubMed:22267487). Transcription factor involved in the regulation of endoreduplication. Represses endoreduplication by activating the gene expression of the key cell-cycle regulators RBR1 and CYCA2-3 (PubMed:25757472). Regulates the expression of the defense gene pathogenesis-related protein 2 (PR2) in antagonism to SRFR1, a negative regulator of effector-triggered immunity (PubMed:24689742). Involved in positive regulation of plant defense. Represses jasmonate (JA) response to promote disease resistance. Regulates the plant immune system by transcriptionally repressing a subset of JA-responsive genes (PubMed:28132837). {ECO:0000269|PubMed:17953649, ECO:0000269|PubMed:21668538, ECO:0000269|PubMed:22155632, ECO:0000269|PubMed:22267487, ECO:0000269|PubMed:24689742, ECO:0000269|PubMed:25655823, ECO:0000269|PubMed:25757472, ECO:0000269|PubMed:28132837}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Induced during seed imbibition (PubMed:17953649). Circadian-regulation with the lowest expression in the middle of the dark period (PubMed:17953649). {ECO:0000269|PubMed:17953649}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_019464078.1 | 1e-143 | PREDICTED: transcription factor TCP14-like | ||||
Swissprot | Q93Z00 | 8e-56 | TCP14_ARATH; Transcription factor TCP14 | ||||
TrEMBL | A0A4P1R2V5 | 1e-141 | A0A4P1R2V5_LUPAN; Uncharacterized protein | ||||
STRING | VIT_17s0000g06020.t01 | 1e-135 | (Vitis vinifera) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G69690.1 | 1e-41 | TCP family protein |
Link Out ? help Back to Top | |
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Phytozome | Kaladp0048s0199.1.p |
Publications ? help Back to Top | |||
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