PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Kaladp0048s0116.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
|
||||||||
Family | MYB_related | ||||||||
Protein Properties | Length: 65aa MW: 7376.17 Da PI: 5.6272 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 50.8 | 3.9e-16 | 16 | 55 | 1 | 41 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqck 41 rg W +eEd+ll ++v+++G+++W+tIa+ ++ gRt++q++ Kaladp0048s0116.1.p 16 RGHWRPEEDQLLRNLVERFGPKNWNTIAEQVQ-GRTGNQLI 55 899*****************************.******85 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 12.896 | 11 | 59 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 1.4E-15 | 15 | 54 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 7.9E-13 | 15 | 59 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 2.5E-7 | 15 | 64 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 1.3E-14 | 16 | 54 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 4.21E-12 | 19 | 56 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 65 aa Download sequence Send to blast |
MEGHEGDNDN QGATSRGHWR PEEDQLLRNL VERFGPKNWN TIAEQVQGRT GNQLIKPFVP 60 FVFI* |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_020522083.1 | 1e-13 | transcription factor MYB52 isoform X2 | ||||
Refseq | XP_024972764.1 | 1e-13 | transcription factor MYB52-like |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT1G17950.1 | 3e-14 | myb domain protein 52 |
Link Out ? help Back to Top | |
---|---|
Phytozome | Kaladp0048s0116.1.p |