PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Protein Features |

Gene Ontology |

Regulation |

Basic Information? help Back to Top

TF ID

Kaladp0048s0115.1.p

Organism

Kalanchoe laxiflora

Taxonomic ID

1670617

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe

Family

Dof

Protein Properties

Length: 401aa MW: 43660.3 Da PI: 7.2556

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Kaladp0048s0115.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	126.6	7.3e-40	65	126	2	63
zf-Dof 2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkksss 63 +++alkcprCdst+tkfCyynnyslsqPryfCk+CrryWtkGG+lrn+PvGgg+rkn+ksss Kaladp0048s0115.1.p 65 QDQALKCPRCDSTHTKFCYYNNYSLSQPRYFCKTCRRYWTKGGTLRNIPVGGGCRKNRKSSS 126 6899******************************************************9875 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
ProDom	PD007478	2.0E-28	54	119	IPR003851	Zinc finger, Dof-type
Pfam	PF02701	4.3E-33	66	123	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	29.124	69	123	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	71	107	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 401 aa Download sequence Send to blast
MALTSLQVCM DMENSASDQH HHWLQGTMHE DALMDSSSSP SGGDILACSG PSPILMSERR 60 LRPPQDQALK CPRCDSTHTK FCYYNNYSLS QPRYFCKTCR RYWTKGGTLR NIPVGGGCRK 120 NRKSSSSSSK KPSSSEPLQV YQPLSSVPPP PINNTQINHN PNSPMTTMMM TIPNDTADLQ 180 LSFQNNEGFP FSHMNYIGSG ASRNGSRGGM GGGYSESRSL FNSIALLESS SSGGLMRPID 240 FLDHKQVESA LVMNNSTSKS SSNNQLGYFS SQFGGGYGSN NSHHASLLNG GNVLQTNLGY 300 AHEVGLNSSS SSYVDRDNTV GQFEYYSGLH GHPENVPMDC EAKPDKKMLA IEWQQEAARE 360 ESYGPYHLGS AWSGMPSSGS YHHHQNQLLL PSTAANNSLV *

Sequence ? help Back to Top

Protein Sequence Length: 401 aa Download sequence Send to blast

MALTSLQVCM DMENSASDQH HHWLQGTMHE DALMDSSSSP SGGDILACSG PSPILMSERR  60
LRPPQDQALK CPRCDSTHTK FCYYNNYSLS QPRYFCKTCR RYWTKGGTLR NIPVGGGCRK  120
NRKSSSSSSK KPSSSEPLQV YQPLSSVPPP PINNTQINHN PNSPMTTMMM TIPNDTADLQ  180
LSFQNNEGFP FSHMNYIGSG ASRNGSRGGM GGGYSESRSL FNSIALLESS SSGGLMRPID  240
FLDHKQVESA LVMNNSTSKS SSNNQLGYFS SQFGGGYGSN NSHHASLLNG GNVLQTNLGY  300
AHEVGLNSSS SSYVDRDNTV GQFEYYSGLH GHPENVPMDC EAKPDKKMLA IEWQQEAARE  360
ESYGPYHLGS AWSGMPSSGS YHHHQNQLLL PSTAANNSLV *

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK376388	6e-51	AK376388.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv3122H18.
GenBank	AM084360	6e-51	AM084360.1 Hordeum vulgare subsp. vulgare dof12 gene for dof zinc finger protein 12, exons 1-2.

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G62940.1	3e-44	Dof family protein

Link Out ? help Back to Top
Phytozome	Kaladp0048s0115.1.p