PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Kaladp0048s0102.8.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
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Family | bHLH | ||||||||
Protein Properties | Length: 257aa MW: 27919.5 Da PI: 8.0717 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 27.3 | 6.6e-09 | 158 | 205 | 4 | 55 |
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +h+ +Er RR +i +++ L++l+P + sk Ka +L + ++Y++sLq Kaladp0048s0102.8.p 158 SHSLAERARRVKISERMKILQDLVPGC----SKVIGKALVLDEIINYVQSLQ 205 8*************************9....566*****************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00083 | 4.99E-7 | 152 | 205 | No hit | No description |
SuperFamily | SSF47459 | 9.16E-16 | 152 | 221 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 8.9E-16 | 154 | 221 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
PROSITE profile | PS50888 | 14.799 | 154 | 204 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 2.3E-6 | 158 | 205 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 2.9E-6 | 160 | 210 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 257 aa Download sequence Send to blast |
MELPLVNESS FTPASLASYS LEDFWPLGAG IGDHARVLGL RTANSERAGL GNRDGSAEES 60 TVTDQSFSRN GGGGRKRRLA DESSKVGEAS GGAGQLKTSS TKRVNILELK EEQKSMKDEV 120 DGTYVTGAKH AEQSTKVSEP SKLDYIHVRA RRGQATDSHS LAERARRVKI SERMKILQDL 180 VPGCSKVIGK ALVLDEIINY VQSLQYQVEF LSMKLEAVNS SIVPKDKMLP AKDVSYHACL 240 TVNFMTCQVD LDSLAR* |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015882712.1 | 4e-81 | transcription factor bHLH79 isoform X1 | ||||
Refseq | XP_018831619.1 | 4e-81 | PREDICTED: transcription factor bHLH79-like isoform X1 | ||||
Swissprot | Q9LV17 | 3e-56 | BH079_ARATH; Transcription factor bHLH79 | ||||
TrEMBL | A0A2I4FIZ4 | 8e-80 | A0A2I4FIZ4_JUGRE; transcription factor bHLH79-like isoform X1 | ||||
STRING | XP_002511487.1 | 5e-79 | (Ricinus communis) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G62610.1 | 1e-58 | bHLH family protein |
Link Out ? help Back to Top | |
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Phytozome | Kaladp0048s0102.8.p |
Publications ? help Back to Top | |||
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