PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kaladp0048s0102.5.p
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family bHLH
Protein Properties Length: 239aa    MW: 26000.3 Da    PI: 9.5739
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kaladp0048s0102.5.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH27.55.8e-09158205455
                          HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                  HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                          +h+ +Er RR +i +++  L++l+P +    sk   Ka +L + ++Y++sLq
  Kaladp0048s0102.5.p 158 SHSLAERARRVKISERMKILQDLVPGC----SKVIGKALVLDEIINYVQSLQ 205
                          8*************************9....566*****************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474597.98E-16152221IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.13E-6152205No hitNo description
Gene3DG3DSA:4.10.280.107.7E-16154221IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088814.799154204IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.0E-6158205IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003532.9E-6160210IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 239 aa     Download sequence    Send to blast
MELPLVNESS FTPASLASYS LEDFWPLGAG IGDHARVLGL RTANSERAGL GNRDGSAEES  60
TVTDQSFSRN GGGGRKRRLA DESSKVGEAS GGAGQLKTSS TKRVNILELK EEQKSMKDEV  120
DGTYVTGAKH AEQSTKVSEP SKLDYIHVRA RRGQATDSHS LAERARRVKI SERMKILQDL  180
VPGCSKVIGK ALVLDEIINY VQSLQYQVEF LSMKLEAVNS SIVPKDKMLP AKDHRSRL*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015882712.15e-81transcription factor bHLH79 isoform X1
RefseqXP_018831619.15e-81PREDICTED: transcription factor bHLH79-like isoform X1
SwissprotQ9LV173e-56BH079_ARATH; Transcription factor bHLH79
TrEMBLA0A2I4FIZ41e-79A0A2I4FIZ4_JUGRE; transcription factor bHLH79-like isoform X1
STRINGXP_002511487.13e-79(Ricinus communis)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G62610.11e-58bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]