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Plant Transcription
Factor Database
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Transcription Factor Information
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Basic
Information? help
Back to Top |
| TF ID |
Kaladp0048s0067.1.p |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
|
| Family |
MIKC_MADS |
| Protein Properties |
Length: 240aa MW: 27190.1 Da PI: 8.9206 |
| Description |
MIKC_MADS family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Kaladp0048s0067.1.p | genome | JGI | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | SRF-TF | 90.9 | 6.2e-29 | 9 | 59 | 1 | 51 |
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
krienk+nrqvtfskRr g+lKKA E+SvLCda+va+i+fs++gkl ey++
Kaladp0048s0067.1.p 9 KRIENKINRQVTFSKRRSGLLKKACEISVLCDADVALIVFSTKGKLSEYAT 59
79***********************************************86 PP
|
| 2 | K-box | 94.9 | 1.3e-31 | 86 | 174 | 12 | 100 |
K-box 12 akaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkklee 100
+ s++ e+akL+ +ie Lqr+qR+l+GedL++Lsl+eLq++e+qLe++lk+iR kKn+l+ +i e+ kk k +qeen+ L kk++e
Kaladp0048s0067.1.p 86 ISTGSWSLEHAKLRHRIEHLQRNQRNLVGEDLDPLSLRELQSVEHQLENALKHIRLKKNQLMNLSIAEMHKKDKIMQEENNFLGKKIKE 174
45789*********************************************************************************987 PP
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| Protein Features
? help Back to Top |
 |
| Database |
Entry ID |
E-value |
Start |
End |
InterPro ID |
Description |
| SMART | SM00432 | 3.6E-37 | 1 | 60 | IPR002100 | Transcription factor, MADS-box |
| PROSITE profile | PS50066 | 30.838 | 1 | 61 | IPR002100 | Transcription factor, MADS-box |
| SuperFamily | SSF55455 | 9.03E-32 | 2 | 88 | IPR002100 | Transcription factor, MADS-box |
| CDD | cd00265 | 7.34E-39 | 2 | 79 | No hit | No description |
| PRINTS | PR00404 | 2.5E-29 | 3 | 23 | IPR002100 | Transcription factor, MADS-box |
| PROSITE pattern | PS00350 | 0 | 3 | 57 | IPR002100 | Transcription factor, MADS-box |
| Pfam | PF00319 | 5.5E-24 | 10 | 57 | IPR002100 | Transcription factor, MADS-box |
| PRINTS | PR00404 | 2.5E-29 | 23 | 38 | IPR002100 | Transcription factor, MADS-box |
| PRINTS | PR00404 | 2.5E-29 | 38 | 59 | IPR002100 | Transcription factor, MADS-box |
| PROSITE profile | PS51297 | 15.395 | 88 | 178 | IPR002487 | Transcription factor, K-box |
| Pfam | PF01486 | 3.3E-25 | 89 | 172 | IPR002487 | Transcription factor, K-box |
| Gene Ontology ? help Back to Top |
| GO Term |
GO Category |
GO Description |
| GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
| GO:0005634 | Cellular Component | nucleus |
| GO:0003677 | Molecular Function | DNA binding |
| GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
| GO:0046983 | Molecular Function | protein dimerization activity |
| Sequence ? help Back to Top |
| Protein Sequence Length: 240 aa
Download sequence Send
to blast |
MGRGRVQLKR IENKINRQVT FSKRRSGLLK KACEISVLCD ADVALIVFST KGKLSEYATD 60
ASMERILERY ESYSSSDKQI VSTDLISTGS WSLEHAKLRH RIEHLQRNQR NLVGEDLDPL 120
SLRELQSVEH QLENALKHIR LKKNQLMNLS IAEMHKKDKI MQEENNFLGK KIKESEKALA 180
ELGQLDCQSQ DASQPPIIMS EPTTQHVDIN REISSGEGST NQNQPCTALL PWMLRGPSK*
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| Functional Description ? help
Back to Top |
| Source |
Description |
| UniProt | Probable transcription factor. |
