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Plant Transcription
Factor Database
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Transcription Factor Information
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Basic
Information? help
Back to Top |
| TF ID |
Kaladp0048s0049.1.p |
| Organism |
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| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
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| Family |
NAC |
| Protein Properties |
Length: 210aa MW: 23848.4 Da PI: 6.0925 |
| Description |
NAC family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Kaladp0048s0049.1.p | genome | JGI | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | NAM | 109.5 | 3.8e-34 | 13 | 137 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgk.. 88
lppGfrF P+deelvv++L++k++ +++ +vi+++++y ++Pw+L+ k+ +e ++wyfFs+++ + + r t++gyWk+ +
Kaladp0048s0049.1.p 13 LPPGFRFYPSDEELVVHFLRRKASLLPCHP-DVIPDLELYPYDPWQLRGKALEEGNQWYFFSRKQPPS-----HYRRTNNGYWKKAHHad 96
79*************************999.99**************977777899******997754.....4566899***9664422 PP
NAM 89 ..dkevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128
+++++s k++l+glk+ vf+ g+ap+g+ t+W+m+ey+l
Kaladp0048s0049.1.p 97 rqEQPIFS-KQRLIGLKRHYVFHIGEAPSGVMTNWIMDEYSL 137
22788998.999****************************97 PP
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| Gene Ontology ? help Back to Top |
| GO Term |
GO Category |
GO Description |
| GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
| GO:0010089 | Biological Process | xylem development |
| GO:0043067 | Biological Process | regulation of programmed cell death |
| GO:0048367 | Biological Process | shoot system development |
| GO:0003677 | Molecular Function | DNA binding |
| Sequence ? help Back to Top |
| Protein Sequence Length: 210 aa
Download sequence Send
to blast |
MGEDGSSNGT RRLPPGFRFY PSDEELVVHF LRRKASLLPC HPDVIPDLEL YPYDPWQLRG 60
KALEEGNQWY FFSRKQPPSH YRRTNNGYWK KAHHADRQEQ PIFSKQRLIG LKRHYVFHIG 120
EAPSGVMTNW IMDEYSLSSD TASSSSKRRG TKTERSKWVV CRVYEQSDGD DEEHGGGSGG 180
GGGGIELSCL DEVFLSLEDE LDDISYPSC*
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| 3D Structure ? help Back to Top |
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| PDB ID |
Evalue |
Query Start |
Query End |
Hit Start |
Hit End |
Description |
| 1ut4_A | 4e-34 | 13 | 166 | 17 | 165 | NO APICAL MERISTEM PROTEIN |
| 1ut4_B | 4e-34 | 13 | 166 | 17 | 165 | NO APICAL MERISTEM PROTEIN |
| 1ut7_A | 4e-34 | 13 | 166 | 17 | 165 | NO APICAL MERISTEM PROTEIN |
| 1ut7_B | 4e-34 | 13 | 166 | 17 | 165 | NO APICAL MERISTEM PROTEIN |
| 4dul_A | 4e-34 | 13 | 166 | 17 | 165 | NAC domain-containing protein 19 |
| 4dul_B | 4e-34 | 13 | 166 | 17 | 165 | NAC domain-containing protein 19 |
| Search in ModeBase |
| Functional Description ? help
Back to Top |
| Source |
Description |
| UniProt | Probable transcription factor that influences tracheary elements and xylem development by negatively regulating secondary cell wall fiber synthesis and programmed cell death. {ECO:0000269|PubMed:18069942, ECO:0000269|PubMed:20458494}. |
