PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kaladp0047s0012.1.p
Organism
Kalanchoe laxiflora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family TALE
Protein Properties Length: 580aa    MW: 64420.6 Da    PI: 6.9733
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kaladp0047s0012.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox25.32.7e-083644011954
                          HHH..SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS
             Homeobox  19 Fek..nrypsaeereeLAkklgLterqVkvWFqNrRak 54 
                          Fe   ++yp+ +++  LA+++gLt  qV++WF N R +
  Kaladp0047s0012.1.p 364 FEHflHPYPKDSDKIILARQTGLTRGQVSNWFINARVR 401
                          554459******************************88 PP
2BELL118.53e-38226297172
                 BELL   1 erqelqkkkakLlslleeVdkrYkqyveqlqtvissFeavaglgsakpYtslAlkaiSrhFrcLkdaiaeqi 72 
                          er++ q+k +kLls+l+eVd+ Ykqy++q+q+v+ssF++v g g+++pYt+lAl+aiSrhFrcL+dai++qi
  Kaladp0047s0012.1.p 226 ERNDFQNKLTKLLSMLDEVDRTYKQYYHQMQIVVSSFDTVSGNGASRPYTALALQAISRHFRCLRDAITNQI 297
                          68999******************************************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005744.8E-60151295IPR006563POX domain
PfamPF075264.2E-49157294IPR006563POX domain
PROSITE profilePS5007111.742342405IPR001356Homeobox domain
CDDcd000869.73E-11345406No hitNo description
SMARTSM003892.5E-8345409IPR001356Homeobox domain
SuperFamilySSF466891.58E-16346412IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.602.1E-27348411IPR009057Homeodomain-like
PfamPF059209.4E-17362401IPR008422Homeobox KN domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 580 aa     Download sequence    Send to blast
MSTYYPTTST QRDAATMHYL KENYPGSHQQ SQENMMMVKY PLSYGAYSDM MGSNGQRQHP  60
QEEMMPSLGE WRDGRNEMMV MRPTGSNLHG QGLSLSLGTQ IPLGIQVPPI QFRNLNPGFT  120
SFPGSNASGD GGSIRDDENS LDKLNSNQSV LGMSRPISNS RYLKAAQELL DEVVNVKKAL  180
EQQPDFDKDQ DKHDLKRKAS NEHSAGEPSD RQGSGGKSAN ELSAAERNDF QNKLTKLLSM  240
LDEVDRTYKQ YYHQMQIVVS SFDTVSGNGA SRPYTALALQ AISRHFRCLR DAITNQIQAT  300
RKSLGDQEAA GSGKGVGISR LRFVDQQLRQ QKALQQLGMM QQHTWRPQRG LPESSVSVLR  360
AWLFEHFLHP YPKDSDKIIL ARQTGLTRGQ VSNWFINARV RLWKPMVEEM YKEEAGEAEI  420
DSNSSSDQTP RGANKDETRN PENLPEQEMP QQSLTHNIPA ADMVRSSQGG SAVFQNGPQG  480
EAANNFRAIQ SGNRFVDGSA AAYHVSELGR FANNGGVSLT LGLQNYEGGM LPMSSESHRS  540
FVAMRSSNMY NPASGAIQQE PADCEQHRFS THLLRDFVA*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3k2a_A2e-15351409563Homeobox protein Meis2
3k2a_B2e-15351409563Homeobox protein Meis2
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010647690.10.0PREDICTED: BEL1-like homeodomain protein 6
SwissprotQ9SIW11e-134BLH7_ARATH; BEL1-like homeodomain protein 7
TrEMBLA0A438DMH00.0A0A438DMH0_VITVI; BEL1-like homeodomain protein 6
TrEMBLF6I1B00.0F6I1B0_VITVI; Uncharacterized protein
STRINGVIT_03s0038g00050.t010.0(Vitis vinifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G34610.21e-123BEL1-like homeodomain 6
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]