PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe

Family

MYB

Protein Properties

Length: 948aa MW: 106913 Da PI: 5.5359

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Kaladp0046s0332.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	43.1	9.4e-14	8	53	2	48
SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 g W Ede+l+ av ++G+++W++I++ + ++++kqck rw+ +l Kaladp0046s0332.1.p 8 GVWKNTEDEILKAAVMKYGKNQWARISSLLV-RKSAKQCKARWYEWL 53 78***************************.**********986 PP
2	Myb_DNA-binding	32.9	1.6e-10	60	103	2	48
SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 WT eEde+l+++ k++++ W+tIa +g Rt+ qc +r+ k+l Kaladp0046s0332.1.p 60 TEWTREEDEKLLHLAKLMPTQ-WRTIAPIVG--RTPSQCLERYEKLL 103 68***************99.****8..********9986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	22.008	2	57	IPR017930	Myb domain
Gene3D	G3DSA:1.10.10.60	5.6E-18	5	56	IPR009057	Homeodomain-like
SMART	SM00717	7.0E-15	6	55	IPR001005	SANT/Myb domain
Pfam	PF13921	4.1E-13	10	70	No hit	No description
CDD	cd00167	1.26E-11	10	53	No hit	No description
SuperFamily	SSF46689	7.91E-21	33	106	IPR009057	Homeodomain-like
CDD	cd11659	3.55E-30	55	106	No hit	No description
Gene3D	G3DSA:1.10.10.60	3.3E-14	57	104	IPR009057	Homeodomain-like
PROSITE profile	PS51294	16.443	58	107	IPR017930	Myb domain
SMART	SM00717	1.7E-12	58	105	IPR001005	SANT/Myb domain
Pfam	PF11831	1.2E-56	407	655	IPR021786	Pre-mRNA splicing factor component Cdc5p/Cef1

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0009870	Biological Process	defense response signaling pathway, resistance gene-dependent
GO:0010204	Biological Process	defense response signaling pathway, resistance gene-independent
GO:0042742	Biological Process	defense response to bacterium
GO:0050832	Biological Process	defense response to fungus
GO:0009507	Cellular Component	chloroplast
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 948 aa Download sequence Send to blast
MRIMIKGGVW KNTEDEILKA AVMKYGKNQW ARISSLLVRK SAKQCKARWY EWLDPSIKKT 60 EWTREEDEKL LHLAKLMPTQ WRTIAPIVGR TPSQCLERYE KLLDAACARD ENYEPGDDPR 120 KLRPGEIDPN PESKPARPDP VDMDEDEKEM LSEARARLAN TRGKKAKRKA REKQLEEARR 180 LASLQKKREL KAAGIDNRHR KRKRKGIDYN AEIPFEKKPP PGFYDVTDED RPVEQPKFPT 240 TIEELEGKRR ADVEAQLRRQ DAARNKIAER QDVLSAIVQA NKLNDPETVR KRSKLMLPPP 300 QISDQELEEI AKMGYASDLL AGSEELTEGS GATRALLAQY AQTPLPGMSQ LRTPQRTPAG 360 KGDAIMMEAE NLARLRESQT PLLGGENPEL HPSDFSGVTP KKREIQTPNV MLTPSSTPGA 420 AGLTPRIGMT PTRDGYSFGL TPKGTPIRDG LHINEGLEVH DSVKLEQRKR ADMKRSLLSG 480 LSGLPQPKNE YQIVMQAPPD DDEDLEEKIE EDMSDRLARE RAEEEARIQV LLRKRSKVLQ 540 RELPRPPVSS LDLLRNSLMR TDEDKSSFVP PTSIEQADEL IRKEFLCLLE HDNAKYPLEE 600 KSEKDKKIRG KRGKFAGTVP TIDDFEEDEM KEAGIMIKEE AEFLRAAMGH ENGSLEEFVE 660 AHKTCLNDLM YFPTRNAYGL SSVAGNAEKI SALQSEFENV KKRMDEDTRK AQKLEQKIKV 720 LTQGYQGRSL KLWSQVEATS KQKDTATTEL ECFRVLHKQE QLAASHRING LREEVKKQKE 780 LEETLQRHYG KLLVEQERVK SLVNEYRLQE EMAAEKRAAE LSDAAATAAI TNIPNDATTF 840 SESTDLVASS AEHANATIKG ESSPSRVPRQ SMDVAQEQTF SISNLDAEAN KADIAQSNEE 900 QAPTEVSYLV STSEDQEDES LKSEDKAEQD QAAHVSARQG NETETGN*

Sequence ? help Back to Top

Protein Sequence Length: 948 aa Download sequence Send to blast

MRIMIKGGVW KNTEDEILKA AVMKYGKNQW ARISSLLVRK SAKQCKARWY EWLDPSIKKT  60
EWTREEDEKL LHLAKLMPTQ WRTIAPIVGR TPSQCLERYE KLLDAACARD ENYEPGDDPR  120
KLRPGEIDPN PESKPARPDP VDMDEDEKEM LSEARARLAN TRGKKAKRKA REKQLEEARR  180
LASLQKKREL KAAGIDNRHR KRKRKGIDYN AEIPFEKKPP PGFYDVTDED RPVEQPKFPT  240
TIEELEGKRR ADVEAQLRRQ DAARNKIAER QDVLSAIVQA NKLNDPETVR KRSKLMLPPP  300
QISDQELEEI AKMGYASDLL AGSEELTEGS GATRALLAQY AQTPLPGMSQ LRTPQRTPAG  360
KGDAIMMEAE NLARLRESQT PLLGGENPEL HPSDFSGVTP KKREIQTPNV MLTPSSTPGA  420
AGLTPRIGMT PTRDGYSFGL TPKGTPIRDG LHINEGLEVH DSVKLEQRKR ADMKRSLLSG  480
LSGLPQPKNE YQIVMQAPPD DDEDLEEKIE EDMSDRLARE RAEEEARIQV LLRKRSKVLQ  540
RELPRPPVSS LDLLRNSLMR TDEDKSSFVP PTSIEQADEL IRKEFLCLLE HDNAKYPLEE  600
KSEKDKKIRG KRGKFAGTVP TIDDFEEDEM KEAGIMIKEE AEFLRAAMGH ENGSLEEFVE  660
AHKTCLNDLM YFPTRNAYGL SSVAGNAEKI SALQSEFENV KKRMDEDTRK AQKLEQKIKV  720
LTQGYQGRSL KLWSQVEATS KQKDTATTEL ECFRVLHKQE QLAASHRING LREEVKKQKE  780
LEETLQRHYG KLLVEQERVK SLVNEYRLQE EMAAEKRAAE LSDAAATAAI TNIPNDATTF  840
SESTDLVASS AEHANATIKG ESSPSRVPRQ SMDVAQEQTF SISNLDAEAN KADIAQSNEE  900
QAPTEVSYLV STSEDQEDES LKSEDKAEQD QAAHVSARQG NETETGN*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5mqf_L	0.0	2	801	3	800	Cell division cycle 5-like protein
5xjc_L	0.0	2	801	3	800	Cell division cycle 5-like protein
5yzg_L	0.0	2	801	3	800	Cell division cycle 5-like protein
5z56_L	0.0	2	801	3	800	Cell division cycle 5-like protein
5z57_L	0.0	2	801	3	800	Cell division cycle 5-like protein
5z58_L	0.0	2	801	3	800	Cell division cycle 5-like protein
6ff4_L	0.0	2	801	3	800	Cell division cycle 5-like protein
6ff7_L	0.0	2	801	3	800	Cell division cycle 5-like protein
6icz_L	0.0	2	801	3	800	Cell division cycle 5-like protein
6id0_L	0.0	2	801	3	800	Cell division cycle 5-like protein
6id1_L	0.0	2	801	3	800	Cell division cycle 5-like protein
6qdv_O	0.0	2	801	3	800	Cell division cycle 5-like protein
Search in ModeBase

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	185	204	KKRELKAAGIDNRHRKRKRK
2	199	204	RKRKRK

Functional Description ? help Back to Top
Source	Description
UniProt	Component of the MAC complex that probably regulates defense responses through transcriptional control and thereby is essential for plant innate immunity. Possesses a sequence specific DNA sequence 'CTCAGCG' binding activity. Involved in mRNA splicing and cell cycle control. May also play a role in the response to DNA damage. {ECO:0000250\|UniProtKB:Q99459, ECO:0000269\|PubMed:17298883, ECO:0000269\|PubMed:17575050, ECO:0000269\|PubMed:8917598}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00028	SELEX	Transfer from AT1G09770	Download

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_021651237.1	0.0	cell division cycle 5-like protein
Swissprot	P92948	0.0	CDC5L_ARATH; Cell division cycle 5-like protein
TrEMBL	A0A2C9VAY9	0.0	A0A2C9VAY9_MANES; Uncharacterized protein
TrEMBL	A0A2R6PKF6	0.0	A0A2R6PKF6_ACTCH; Cell division cycle 5-like protein
STRING	cassava4.1_000851m	0.0	(Manihot esculenta)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G09770.1	0.0	cell division cycle 5

Link Out ? help Back to Top
Phytozome	Kaladp0046s0332.1.p

Publications ? help Back to Top
Heyndrickx KS,Vandepoele K Systematic identification of functional plant modules through the integration of complementary data sources. Plant Physiol., 2012. 159(3): p. 884-901 [PMID:22589469] Li S, et al. MAC3A and MAC3B, Two Core Subunits of the MOS4-Associated Complex, Positively Influence miRNA Biogenesis. Plant Cell, 2018. 30(2): p. 481-494 [PMID:29437988]