PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Kaladp0046s0329.1.p

Organism

Kalanchoe laxiflora

Taxonomic ID

1670617

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe

Family

TCP

Protein Properties

Length: 335aa MW: 35501.7 Da PI: 8.2883

Description

TCP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Kaladp0046s0329.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	TCP	110	3.4e-34	85	175	2	91
TCP 2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec.eaesssssasnsssgka 90 a+++++++++hTkv+gR+RR+R++a+caar+F+L++eLG+++d++t+ WLl+ a++ai e+tgt++ +a ++ ++ + + +sssg++ Kaladp0046s0329.1.p 85 ATGRRSTKDRHTKVEGRGRRIRIPATCAARIFQLTRELGHKSDGETVRWLLEHAEQAIYEATGTGTVPAIAVsVGGTLKIPTTTSSSGES 174 67899***********************************************************88888444322222222222222222 PP TCP 91 a 91 + Kaladp0046s0329.1.p 175 S 175 2 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03634	8.3E-28	90	170	IPR005333	Transcription factor, TCP
PROSITE profile	PS51369	25.205	91	145	IPR017887	Transcription factor TCP subgroup

Sequence ? help Back to Top
Protein Sequence Length: 335 aa Download sequence Send to blast
MNHHHRQIDP ENDEDDDGAD ASDLSKSTGA KNNGCSNGDS KLYPETLSFR SHLLKQEPSD 60 SDHFRQHSRS FGMVPVPMQM PVTVATGRRS TKDRHTKVEG RGRRIRIPAT CAARIFQLTR 120 ELGHKSDGET VRWLLEHAEQ AIYEATGTGT VPAIAVSVGG TLKIPTTTSS SGESSVKKMK 180 RPSTSEFYDV SVSSGLRHVA MSPIPQGLVP IWAVGNPPGM NAVAAGGFWM IRQPPAMPAA 240 TSSQPQLWTI SPSVTPVFNM AGGPDPADVI APSSALDSSL VGASKSSKQL TTMAPSHSSS 300 SSASKTQMAV EIYDRGEALQ LQLMGGSSSP HSSS*

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00635	PBM	Transfer from PK14653.1	Download

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_007211057.1	4e-95	transcription factor TCP9
Refseq	XP_028762754.1	6e-95	LOW QUALITY PROTEIN: transcription factor TCP9-like
Swissprot	O64647	4e-55	TCP9_ARATH; Transcription factor TCP9
TrEMBL	M5WG46	1e-93	M5WG46_PRUPE; Uncharacterized protein
STRING	EMJ12256	2e-94	(Prunus persica)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G45680.1	4e-57	TCP family protein

Link Out ? help Back to Top
Phytozome	Kaladp0046s0329.1.p