PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe

Family

G2-like

Protein Properties

Length: 271aa MW: 29411 Da PI: 7.1333

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Kaladp0046s0192.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	97	1.4e-30	86	139	1	55
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 +prl+Wtp+LH+rFv+av++L G+++A+Pkti++lm+v+gLt+e+v+SHLQkYRl Kaladp0046s0192.1.p 86 RPRLVWTPQLHKRFVDAVAHL-GIKNAVPKTIMQLMSVDGLTRENVASHLQKYRL 139 59*****************.******************************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	11.059	83	142	IPR017930	Myb domain
SuperFamily	SSF46689	2.33E-20	83	143	IPR009057	Homeodomain-like
Gene3D	G3DSA:1.10.10.60	9.6E-31	85	144	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	2.7E-24	87	139	IPR006447	Myb domain, plants
Pfam	PF00249	9.7E-8	89	138	IPR001005	SANT/Myb domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 271 aa Download sequence Send to blast
MKEDESNWFS RWEEQLPSPD ELMPLSQTLI TPHLALVFDL HNPNGISQST PPPAPTLAHP 60 SSSEFENSGD LGSGAGGDEP ARTLKRPRLV WTPQLHKRFV DAVAHLGIKN AVPKTIMQLM 120 SVDGLTRENV ASHLQKYRLY LKRMQGHSNG GGLASSDPAT DHLFASSPVP AHFLHPGGRP 180 GQDHFMPFVA PPQAGRPIWV THPQFHQQRQ VGHFGSPPSN GQFEHSIMAR QQAQPAAHRM 240 GAPPPYGDDV ESGAANGGRK VLTLFPTGDD *

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5lxu_A	2e-32	86	142	1	57	Transcription factor LUX
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor that acts as a negative regulator of freezing tolerance via a CBF-independent pathway. {ECO:0000269\|PubMed:20331973}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Induced by drought, salt and abscisic acid (ABA). Down-regulated by cold. {ECO:0000269\|PubMed:20331973}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010036386.1	1e-113	PREDICTED: transcription factor PCL1
Swissprot	O22210	7e-66	MYBC1_ARATH; Transcription factor MYBC1
TrEMBL	A0A1Q3AMU9	1e-112	A0A1Q3AMU9_CEPFO; Myb_DNA-binding domain-containing protein
STRING	XP_008387427.1	1e-116	(Malus domestica)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G10760.1	3e-92	G2-like family protein

Link Out ? help Back to Top
Phytozome	Kaladp0046s0192.1.p

Publications ? help Back to Top
Sardesai N,Laluk K,Mengiste T,Gelvin S The Arabidopsis Myb transcription factor MTF1 is a unidirectional regulator of susceptibility to Agrobacterium. Plant Signal Behav, 2018. [PMID:24785741]